-
xclone.pp.xclonedata currently only supports hg38 and hg19. Can you please also support mm10 for the RDR analysis of mouse scRNA-seq
-
Following #758, we should go through all materials here and in the exercises to make sure that all of the results are still as expected and build without errors.
-
- [x] [Single-cell transcriptomic atlas reveals increased regeneration in diseased human inner ear balance organs (nih.gov)](https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11156867/pdf/41467_2024_Ar…
-
Hi Alex,
I have a question about best practices for dealing with multi-mapping reads in scRNA-seq data analysis, particularly when looking at transposable elements (TEs). Due to the nature of TEs,…
-
Hi,
many thanks for developing and maintaining this very useful tool!
I have been successfully using fastTopics for scRNA seq analysis of B and T cell differentiation and it added significantly …
-
我已经跑完流程,得到了raw_matrix文件夹,我现在想自己进行从头的质控以及后续一系分析。但是我是进行了很多尝试使用 scanpy 读取总是会报错?不知道是否支持?
-
Hello. Not really an issue but I'd like to reach out with a question as single-cell meta-analysis term is kind of new. I'm curious about what's the difference between the usual Single-cell integrated…
-
Hi.
In your publication :"Analysis of Alzheimer’s disease scRNA-seq data. The MARS-seq scRNA-seq raw data were download from GSE9896971. The raw fastq file were modified using custom scripts to embed t…
-
Hi,
Could you tell me how to get package named "sir" in some notebooks of scRNA-Seq-invivo/analysis_pipeline directory.
I guess that the sir package means sir directory in the scRNA-Seq-invivo/analy…
-
Hello,
I have downloaded the scRNA-seq data from the articles for analysis. Some articles only provided TPM data (The TPM data obtained by RSEM is performed on smart-seq2 data), while others only p…