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Hi, I use flanking sequence of D6S477 as 5' and 3' anchors to call this locus, and the sample is 9948 (a standard sample in forensic). To approve the tolerance of sequecing error or SNP variants in t…
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This is a proposal for a new term "Manual motif inference based on multiple sequence alignment" as used in the CollecTF database (www.collectf.org). Manual motif inference based on multiple sequence a…
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Hello,
Thank you for creating this wonderful software; I foresee great success!
I am trying to run a simple unconditional monomer from my PDB file using the README.md tutorials. So I have my envir…
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Hello:
I run the example codes in the `README`:
```r
check_meme_install()
```
```bash
checking main install
✔ /home/dan/meme/bin
checking util installs
✔ /home/dan/meme/bin/dreme
✔ /…
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All binding is specific - for binding to produce a biological effect, the binding must be specific.
So I will merge:
* 'transcription regulatory region DNA binding' into 'transcription regulator…
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https://dx.doi.org/10.1093/nar/gkv1025
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Dear LTR retriever developers,
I was using RepeatModeler and found that there is no output from LTR retriever (v2.9.8 and v.2.9.9, either from GitHub or Conda). This seems to have been reported be…
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This is based on an issue identified by @salmonix. In the example identified, the sequences of the tale variants are as follows for tale 1341A:
1. "J2356","J2136","J2136"
2. "J2356","J2136","J581…
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## Problem description
While using LTRdigest this error always pops up (which also appears in R studio using ltr digest via the LTRpred package)
**This is a bug, please report it at
https://git…
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Write an iterative method that will start by looking for enrichments and deficiencies for each location and each amino acid. Then it will
- select the significant subset using a given threshold
- fo…