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**DO NOT INCLUDE REQUESTS IN THE FIRST COMMENT.**
**PLEASE POST THIS TEMPLATE UNCHANGED THEN FOLLOW ITS INSTRUCTIONS IN A NEW
COMMENT**
# General Notes
This repository serves as a mostly automated p…
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**# When I run T-DESEQ2 in bulk RNA sequencing analysis.**
treatment_groups=['4-3','4-4']
control_groups=['1--1','1--2']
result=dds.deg_analysis(treatment_groups,control_groups,method='DEseq2')
…
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# Issue Report
## Please describe the issue:
Read splitting didn't work properly in my sequencing data.
This is a similar issue to #709 but my sample was sequenced with RNA004.
The image below i…
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Should the sequencing depth of different datasets and batch effect issues be considered when merging RNA-seq data from different cohorts for input?
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I know that there is already an existing single cell workshop in the incubator. But we developed on last year and have presented it twice. We have received positive student feedback and made several c…
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CNVkit is a best python package to infer copy number information from high-throughput sequencing data
Actually, We are very excited to find that you have provided new function within the software pac…
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Hi @cying111 , thank you so much for putting this dataset together. I am interested in comparing different quantification methods using this dataset, and I am specifically interested in this sample:
…
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Hello! This tool is excellent. Currently, I have a set of regular RNA-seq sequencing data, and I would like to know if it can be used to analyze such data. thank you
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**Operating system**
UNIX
**Package name**
isoseq
**Describe the bug**
We performed single cell RNA sequencing using 10x 5p captures, Mas Isoseq library preparation and sequencing on Revio sy…
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Several grammar and spelling mistakes...