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Hi Robert,
I tried to run bactopia version v3.0.0 with this commandline:
bactopia --samples SAB.txt --ask_merlin --shovill_assembler spades --shovill_opts "--isolate"
SAB.txt looks like
sample…
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![image](https://github.com/EdwardPiwowar/BBA/assets/11272970/fafe1066-6c16-48bf-8c72-f85cc137ef17)
060F3080A55E882F39B7E7DFE672
Probably need some sort of checkback, or 3c needs to be forcing as …
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Hi, I'm having trouble running the workflow as instructed by the tool.
This is my command line used:
nextflow run /hpcfs/home/ing_quimica/v.rua/mettannotator -profile singularity --input /hpcfs/h…
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Hello,
I am trying to run the AAFTF pipeline to assemble several Pleurotus genomes (testing it on 1 genome only) and I thought to run it as a pipeline at first. I am getting this error below. Spad…
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### Description of bug
We performed an hybrid assembly using metaspades (ONT + SR), we had really huge coverage. Nonetheless, one of the final we discovered that there were 5 minority SNPs that were …
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Main citation:
```latex
@Article{Bankevich:12,
author = {Bankevich, Anton and Nurk, Sergey and Antipov, Dmitry and Gurevich, Alexey A and Dvorkin, Mikhail and Kulikov, Alexander S and Lesin, Val…
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Dear All,
I have a problem with unicylcer and short reads alignment by using spades.
I have previously used the same command without any troubles. Now with new sequences, and old ones, unicycler cra…
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### Description of bug
Greetings!
Thank you for the amazing tool. I am having trouble in assembling shotgun metagenomic raw reads of some of the samples. I am not sure what underlying issue is and h…
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### Description of bug
binspreader threw an error while parsing assembly_graph_with_scaffolds.gfa. It looks like there are semicolons where the program was expecting tabs. I did not modify the assemb…
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Sorbet favored `.serialize` instead of `.to_s`.... and has `.to_s` instead alias to `.inspect`. Is there a reason for this?
In terms of ergonomics this is really bad as it breaks string extrapolation…