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Q: How many sourmash hashes does it take to classify a genome uniquely?
If the answer is 1, then there is a single hash that identifies this specific genome! :tada:
If the answer is “you cannot…
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Do you happen to have taxon identifiers for the training data in this file?
https://genome.cshlp.org/content/suppl/2018/03/22/gr.228429.117.DC1/Supplemental_Table_S1.xlsx
It's currently difficu…
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Hi,
I have been trying to run CAS-OFFINDER using the binary files that i have downloaded from https://github.com/snugel/cas-offinder/releases/tag/3.0.0b3.
The input to the binary file is as follo…
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Hi metAMOS team,
I had a question about how the reference genome is determined. I have a bacterial genome, but it is pulling back Abaca_bunchy_top_virus as the best reference. At first I thought the …
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Hello,
I have been getting an intermittent 1;31m*** ERROR ***. I'm unsure what is causing it. When I rerun the sample amrfinder works perfectly fine and all the rest of the samples in the run men…
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There are at least two dozen bacterial sequences of concern that bind host plasminogen to their surfaces. This bound plasmin is generally converted to plasmin which can then mediate serum resistance f…
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The 'https://github.com/ncbi/amr/wiki/Curated-organisms' states 'Cronobacter' in list but its usage in amr throws error- it works fine without mentioning its name in '-O' though!
amrfinder --annota…
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# Genome and indexes for CVMFS and http://usegalaxy.org
**CONVERT THIS ISSUE TO A PROJECT** @jennaj
> This list changes over time as new data sources are targetted for indexing and user requests…
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I annotated the [S. pyogenes reference](https://www.ncbi.nlm.nih.gov/datasets/genome/GCF_900475035.1/) with bakta, and noticed some oddly named CDS. When I compare bakta's results to the RefSeq annota…
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I found issue #521 but none of the tips there helped in my case.
I am trying to run bactopia on WSL + Ubuntu, fresh install. Installed MambaForge as per the installation instructions, then installed …