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Hello,
I was trying to set the "Targeted Sequencing" value for a Library Aliquot with Design Code "TS (Targeted Sequencing)", however, no "Targeted Sequencings" appear in the dropdown menu. There a…
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I have targeted DNA sequencing for a tumour and I do not have any normal samples (matched or even non matched)
I am trying this but I get error
```
Rscript /R/x86_64-pc-linux-gnu-library/4.4/P…
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### Is there an existing module for this?
- [X] I have searched for the existing module
### Is there an open PR for this?
- [X] I have searched for existing PRs
### Is there an open issue for this…
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#### What data file(s) does this issue pertain to?
`independent-specimens.wgswxspanel.primary-plus.prefer.wgs.tsv`
#### What release are you using?
v15
#### Put your question or report y…
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Hello!
First of all, thank you for sharing IsoLamp with us.
I see that IsoLamp was created for the targeted sequencing, but I have a small newbie question. I was wondering if it would be possibl…
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Issue by @MaxUlysse, moved from SciLifeLab#666
- [ ] [ExpansionHunter](https://github.com/Illumina/ExpansionHunter) for estimating repeat sizes
- [ ] [QDNAseq](https://github.com/ccagc/QDNAseq) CN…
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Hey there,
I'm exploring using verkko to assemble some relatively large satellites and segmental duplications in a targeted fashion.
Since the typical HiFi reads + UL reads haven't been sufficie…
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Hi, just looking for some advice -
I am looking at processing tumor-only PDX samples from targeted sequencing. I noticed this workflow on Cavatica and you mention using the Xenome tool for filteri…
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We're currently evaluating an update from version 0.9.9 to 0.9.10. However, we're seeing some increased noise among the ratios and resulting in an increased rate of false positives. Specifically, look…
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HI! I'm having a problem with the cellScann module, in particular I can't understand the reason for this error:
INFO Monopogen.py Get single cell level information from sequencing data...
INFO:_…