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Happy to make a PR to attempt to fix this if you'd like, but since this *could* be a breaking change I thought I'd get your eyes on it first.
I suppose that since `taxizedb` is a drop-in replaceme…
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Hi,
I cannot install MonoPhy because of a dependency (see below). Installation of 'bold' crashes, so 'taxize' cannot be installed.
Hope you can help me! Thanks in advance!
* installing *source* p…
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It looks like a very long list but there are many deprecated, early development, non existent packages. Also packages like spocc = c(AntWeb, Ecoengine, gbif, inat, rebird) + taxize. If we grouped them…
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As we are pushing metadata to NCBI now, it would make sense that the default controlled vocabulary contain phyla from the NCBI taxonomy, which can be obtained with the R taxize command and is attached…
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@sckott, what do you think about this:
1. A method called `check_db_id` of the `taxon_database` class that takes a `taxon_id`. It could optionally use `taxize` to actually check via an API call.
1…
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An aspect that's different from R taxize is that I didn't want to bring the interactive part to this package. That is, the taxize get_* fxns have a prompt if there's more than one result for a taxon n…
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Hi there,
I have a file of genera from some metagenomics sequencing, and I am attempting to use taxize to download higher-level taxonomy data for this file. I create a vector of names (Gnames
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This link on your README and [Packagedown](https://docs.ropensci.org/taxize/index.html) page has been usurped by another website.
`The taxize book: https://taxize.dev/`
Just thought you would …
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Hi,
This function from the **taxize** package works:
``` r
taxize::classification("podoviridae", "ncbi")
#> No ENTREZ API key provided
#> Get one via taxize::use_entrez()
#> See https://ncb…
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I noticed that there is currently not a directory/ implementation for the lowest_common feature that taxize has