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oschwery
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MonoPhy
R package to explore monophyly
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MonoPhy Archived on CRAN
#73
akiledal
closed
2 months ago
3
'bold' dependency installation error
#72
leosanbu
opened
1 year ago
3
Duplicate row names, and NA being evaluated in if statements
#71
bomeara
opened
1 year ago
0
Make the collapsing of monophyletic taxa accessible outside of plot
#70
oschwery
opened
2 years ago
0
Check taxize update
#69
oschwery
opened
2 years ago
0
Multiple input trees
#68
probstrodolfo
opened
2 years ago
1
Add a way to deal with negative branch lengths affecting plotting
#67
oschwery
opened
3 years ago
0
Add check for unrooted trees and prevent running.
#66
oschwery
closed
2 years ago
1
Count number of splitted groups within a phylogeny
#65
StromTroopers
opened
5 years ago
1
Error when using taxize with Pollen tree
#64
oschwery
opened
5 years ago
0
Error message if tip label is only one word
#63
oschwery
opened
5 years ago
2
can now handle a few taxa not matching genus_species and still work
#62
bomeara
opened
6 years ago
0
Taxonomy plots don't work when NA taxa are in set
#61
oschwery
opened
7 years ago
0
Make Unit tests for errors that occurred (and have been solved)
#60
oschwery
opened
7 years ago
0
Fails to run for trees with taxa unassigned
#59
oschwery
closed
7 years ago
1
Add warning or error for unrooted trees
#58
oschwery
closed
2 years ago
1
Think of Readme.Rmd for github page
#57
oschwery
opened
7 years ago
1
Update vignette with CollapseMonophyletic?
#56
oschwery
opened
7 years ago
0
Add Citation Information
#55
oschwery
closed
7 years ago
1
Plot and collapse different levels
#54
oschwery
opened
8 years ago
0
collapsed phy object
#53
oschwery
closed
7 years ago
1
Allow taxonomy file with header
#52
oschwery
closed
8 years ago
1
Taxon brackets for plots
#51
oschwery
opened
8 years ago
0
Add beforehand warnings for arguments
#50
oschwery
opened
8 years ago
0
Allow modification of tiplabel cex
#49
oschwery
opened
8 years ago
0
Breakdown non-monophyly into paraphyly & polyphyly
#48
oschwery
opened
8 years ago
1
(Intruder)plotting for taxize results
#47
oschwery
closed
8 years ago
1
taxize with both findings
#46
oschwery
closed
8 years ago
1
taxize without results
#45
oschwery
closed
8 years ago
1
use of taxize generated taxonfiles
#44
oschwery
closed
8 years ago
1
core clade node
#43
oschwery
opened
8 years ago
0
mistakes in summary table
#42
oschwery
closed
8 years ago
1
plot customisations 2
#41
oschwery
opened
8 years ago
0
match interferes with monocoll
#40
oschwery
closed
8 years ago
1
pdf size limits
#39
oschwery
closed
8 years ago
1
pdf plot dimensions radial trees
#38
oschwery
closed
8 years ago
1
Error when running outliercheck on certain trees
#37
oschwery
closed
8 years ago
1
cex can't be changed for plots
#36
oschwery
closed
8 years ago
1
radial tree tip label mismatch
#35
oschwery
closed
8 years ago
1
merging of clades with similar names
#34
oschwery
closed
8 years ago
2
Input Type specimen to denote "correct" clade
#33
oschwery
opened
8 years ago
0
multi-level taxon file with incomplete levels
#32
oschwery
closed
8 years ago
1
Early diverging non-members for core clade
#31
oschwery
closed
8 years ago
1
Outlier-Intruder not mutually exclusive
#30
oschwery
opened
9 years ago
1
Outlier Plotting
#29
oschwery
closed
9 years ago
2
taxize prompt
#28
oschwery
closed
8 years ago
1
taxize blockage
#27
oschwery
closed
9 years ago
1
Plot problem Intruders
#26
oschwery
closed
9 years ago
1
Taxonomy NA's
#25
oschwery
closed
9 years ago
1
EOL
#24
oschwery
opened
9 years ago
1
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