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Hi,
I've observed an inconsistency in the cell type assignments between two datasets in the repository. Specifically, the cell types mentioned in "prior_marker.csv":
`'vasculature', 'tumor cells',…
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Hello,
We are using ProjecTILs on human scRNA and it works very well, however we have tried using it on mouse multiplex scRNA data from in vito T cells and the classification is not accurate. We ha…
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Hi Aditya @adyprat
Thanks very much for sending the CSV files. I am wondering if it will be feasible to edit the script and integrate only scRNAseq and CODEX only? We want to map those UMAP cluste…
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Create an object slot where the user can put existing labels (e.g. output from Louvain, reference label transfer, etc.).
Write functions to:
- manually edit selected clusters. Specifically, a v…
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When used on a server, trying to delete an unused TARDIS by deleting its folder and unregistering with /treg doesn't seem to work. Any other way?
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Hi @jacobpwagner,
I had a quick question about using `geom_stats`. I am trying to plot a boolean NOT gate with ggcyto, and display the stats for that population. I'm using the `adjust` parameter to…
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Salut. As vrea sa pot sa folosesc `manea.x` ca endpoint, ca sa treg rezultatele de pe server pe orice aplicatie de a mea, fara sa mai import package-ul.
Mersi.
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Hi,
I am a CytoNorm user via FlowJo software.
The normalization process seems to work but when it ends, I can't find any "nomalised" fcs files. In contrast, some new R scripts such as "RScript.C…
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```js
const jstr = 'Ljava/util/Map;Ljava/util/Map;'
// const jstr = 'Ljava/lang/String;ILjava/lang/String;Ljava/lang/String;Ljava/lang/String;III';
const BaseType = 'BCDFIJSZ';
function parseT…
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Dear Colleagues,
I have tried many times on the BloodExtended EPIC data as following:
CellCountsEstimation