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I am new user of STAR, and I am mapping my miRNA fastq file, and my data is 50bp, HS4000 single end run! but the number of reads unmapped and flagged as short is over 97%. Not sure why, any suggestion…
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> for bug reports and errors please report the output of: ./gapseq test
Hi
I am now test-running a gapseq with the following command
conda activate Gapseq ;
Tool="/home/sandia/softwares/…
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Hi
I just noticed that Flaimapper is converted to Python3 and you can detect fragments with the same ends. Thats cool. Is it possible to add parameter to change the length difference? I am actually …
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Hey all,
I am interested in knowing the isodecoder copy number from which certain fragments are derived. For example, in the count output I know:
"tRNA-Ala-AGC-1-1_wholeprecounts"
"tRNA-Ala-AGC…
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Hi!
By using this config file: https://github.com/riboviz/example-datasets/blob/main/fungi/saccharomyces/Weinberg_2016_RPF_1_sample_cerevisiae_CDS_w_250utrs_config_2-1.yaml
The resulting BAM fi…
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see GO ticket go-ontology/issues/23135
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Currently, a products download page is produced directly from the pipeline and left places like: http://snapshot.geneontology.org/products/pages/downloads.html
Some of the text is hard to read for in…
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We would like to add Drosophila melanogaster data to work with Julie Aspden and lab, starting with data from [Extensive translation of small Open Reading Frames](http://dx.doi.org/10.7554/eLife.03528.…
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Hallo.
Can you help me?
anna@anna-G3-3590:~$ prokka
Name:
Prokka 1.14.5 by Torsten Seemann
Synopsis:
rapid bacterial genome annotation
Usage:
prokka [options]
General:
--help …
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* "Do we need to define what is a miRNA before jump into naming?"
**Deadline to participate: May,01.**
**Suggested answers:** a) we should do it before moving forward, b) we can move forward. Pl…