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We currently use the formula: `alt reads / read depth` but a user asked if we shouldn't instead use `alt reads / (ref reads + alt reads`).
Please note that the e formulas can return very different …
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Request to have the same feature as in MIP/SCOUT where all possibly compound variants are uploaded when looking at one variant. Including VAF-data....
. However, in the final VCF all DEL are with VAF 1 meaning that all reads are deleted. Could y…
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Hello guys,
I found a extrange behaviour trying to translate a word:
```python
from urllib.parse import urlencode
import requests
def translate_to_and(sentence, vaf):
encoded_…
ssoto updated
3 years ago
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Hi,
I used SVision-pro to call somatic SVs, but the number of somatic SVs identified is relatively low, only around 500. In comparison, when using pbsv, the number is over 5000. Is it normal?
Be…
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This post details how to correct VAF to CCF, including confidence intervals. I should implement this method for the shiny interface.
https://www.biostars.org/p/6368/