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### Description of feature
Hi!
I was trying out the `joint_germline` option, which produces a multi-sample VCF file from haplotypecaller. It would be helpful to have a similar feature for othe…
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Dragen 4.2 now offers a high-sensitivity mode:
https://developer.illumina.com/news-updates/dragen-4-2-enhanced-machine-learning-new-targeted-callers-and-more
Dragen 4.3 imporves the high-sensitivity …
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The [calling docs](https://varlociraptor.github.io/docs/calling/)
> In particular, you can also first combine candidates from different callers, to cover diverse variant types and length ranges
T…
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Lets **have two sets of indel metrics**
- one for short
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Hi there,
I'm trying to use SURVIVOR to merge matching tumour and normal vcfs generated by sniffles from PromethION data. However, this seems to be erroneously losing variants during the merge. I'v…
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Hi,
I was wondering if you might be able to explain some very high QUAL scores in my VCFs?
I am calling variants from recent, high-quality bacterial (i.e., haploid) nanopore data.
This is the…
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Hi!
Is it possible to filter the cancer variants by 'Qual' to, for example, obtain only 'PASS' variants or filter out cancer-germline variants? Alternatively, can the 'Qual' field be sorted so that '…
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As an example, (I hope that this Scout-link will persist): https://scout-stage.scilifelab.se/cust087/F0049453/sv/variants/8e2113f40646b16473f9a12af4e57e0b
This is one of the variants that we're loo…
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When subsets of the callers make a variant call, we get a nice dash-delimited list of the outputs in the "set" attribute: `set=mutect-varscan-strelka`
When every caller makes a call, we just get `…
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Admission control is currently opt-in, in the sense that it's controlled by `BatchRequest.AdmissionHeader` and the zero value for `Source` (`OTHER`) is currently excluded from admission control. I bel…