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ga4gh
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quality-control-wgs
Home for the GA4GH Quality Control of Whole Genome Sequencing metrics and reference implementations
https://www.ga4gh.org/product/wgs-quality-control-standards/
Apache License 2.0
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ALN and VCF based QC metrics distribution - colour by gender and population (Feature/plots enhancement)
#33
justinjj24
opened
3 days ago
0
Update functionaly equivanent metrics definiton Feature/functional equiv
#32
justinjj24
opened
1 week ago
0
Variant Calling based QC Metrics’ Definition
#31
justinjj24
opened
1 month ago
0
Post Variant Calling Metrics' "Terminologies & Concepts" info
#30
justinjj24
opened
2 months ago
1
Post Variant Calling Metrics pertaining to insertion and deletion metrics
#29
justinjj24
opened
2 months ago
2
Post Variant Calling "Ratio: Transitions/Transversions (ti/tv)" Metric
#28
justinjj24
opened
2 months ago
1
Post Variant Calling Metrics' "Terminologies & Concepts" info
#27
justinjj24
opened
2 months ago
1
Post Variant Calling Metrics' definition
#26
justinjj24
opened
2 months ago
1
Post Variant Calling Metrics' "Functionally equivalent implementations" info
#25
justinjj24
opened
2 months ago
1
Post Variant Calling Metrics ID
#24
justinjj24
opened
2 months ago
1
Post Variant Calling Metric "SVN count" ID should probly by `pass_snv_count`
#23
c-BIG-admin
closed
1 month ago
1
code to plot metrics correlation between pipelines
#22
justinjj24
opened
3 months ago
1
redefine the definition of picard collectwgsmetrics based metrices
#21
justinjj24
opened
3 months ago
0
Upgrade npm-sample-qc to v0.11.0
#20
mhebrard
closed
9 months ago
0
Feature/argo benchmark results
#19
lindaxiang
closed
4 months ago
6
metrics.json from npm-sample-qc v0.10.2
#18
mhebrard
closed
9 months ago
2
add novel `cross_contamination_rate` metric
#17
justinjj24
closed
7 months ago
4
add novel `insert size standard deviation` metric
#16
justinjj24
closed
7 months ago
3
Evenness of Coverage QC Metric
#15
gobelina
closed
7 months ago
4
improved `mean_insert_size` metric definition
#14
nicolas-bertin
closed
7 months ago
4
improved `discordant_read_pairs` metric definition, renamed as `pct_reads_properly_paired`
#13
nicolas-bertin
closed
7 months ago
1
improved `read_mapping_quality` metric definition, renamed as `pct_reads_mapped`
#12
nicolas-bertin
closed
7 months ago
1
improved `autosome_coverage_uniformity` metric definition
#11
nicolas-bertin
closed
7 months ago
1
improved `pct_autosomes_15x` metric definition
#10
nicolas-bertin
closed
7 months ago
2
improved `mean_autosome_coverage` metric definition
#9
nicolas-bertin
closed
7 months ago
2
improved `yield_bp_q30` metric definition
#8
nicolas-bertin
closed
7 months ago
2
Proposal for major revision of metric definition
#7
mhebrard
closed
10 months ago
1
Create pull_request_template.md
#6
skanwal
closed
1 year ago
0
Update issue templates
#5
skanwal
closed
1 year ago
3
Ref. Implementation & resources
#4
mhebrard
closed
1 year ago
0
Add supporting links to GitHub docs
#3
skanwal
closed
1 year ago
0
#1 - Process for PR/issue review and contributions
#2
lindsmith
closed
1 year ago
0
Developing a process for issue review and contributions
#1
lindsmith
closed
1 year ago
9