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This is like a super simple request/idea. Hopefully, not a duplicate.
Basically, it would be great if there was a checkbox in the add torrent dialog for making the new torrent have a "Forced" state. …
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Variant prioritization fails when "NA" is encountered, which throws the following error:
prioritization.py priority_tmp.txt
Traceback (most recent call last):
File "/path/to/MToolBox/MToolBox/p…
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Hello,
I see that LUMPY is coming from the same lab as GEMINI, so I was wondering if there is a workflow for running annotating and filtering variants called by LUMPY.
Ideally, the pipeline would …
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Dear gemini team,
I use gemini very frequently and it is an awesome tool for variant prioritization within large databases. However, one thing I could not find out yet is how to use the gt.alt.freq…
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Hello!
We have a few enhancement requests to make. Mainly concerning the outputs -
- HTML output to include variants of interest
- HTML output with population filtered variants
As it stands…
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This is a summary of the current status of investigating a bug that appears to be strongly connected to the lambda-lifting pass in Miking, which is used in Miking-dppl, which treeppl uses under the ho…
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$ ./extasy.rb -i myfile.vcf -g ./geneprios/res/HP_0002863_fgs.tsv -k
2013-11-15 14:45:10 +0100: Sorting input VCF...
2013-11-15 14:45:10 +0100: Input VCF sorted...
2013-11-15 14:45:10 +0100: Finding m…
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1. Investigate how we end-up with large number of locks in non-transactional mode.
2. Make non-transactional metadata-sync truly idempotent:
e.g., the commands that we send to detach partitions i…
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Hi dear Ensembl team,
I'm having some issues because I would like to annotate my genetic variants based on the canonical isoforms from UniProt, but I can't find a way to do it. Sometimes the MANE …
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Unable to input VCF for variants/genes input step
![image](https://user-images.githubusercontent.com/22081541/148126555-f7f9aeaf-d5f2-47ea-bdc0-208b0ceefc46.png)
Download this VCF that contains …