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Hi @hoelzer
Thanks for a very nice tool to calculate the POCP. After installing, java, nextfow, I try to run: nextflow run hoelzer/pocp -r 2.3.4 --proteins *.faa -profile slurm,conda but I get n…
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== Error == system call for: "['/sw/bioinfo/spades/3.13.1/rackham/bin/spades-core', '/domus/K55/configs/config.info', '/domus/K55/configs/mda_mode.info', '/domus/K55/configs/meta_mode.info']" finishe…
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Placeholder for backlog --> This might become an epic
**Task Breakdown:**
- [x] First test loading with files with actual Translocations --> Reach out to Caroline & bioinfo
- [x] Add logic to restri…
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Hi, in the chapter 11.5 getMotif2Gene of the manual, you mentioned that a _tf_family.txt_ file should be prepared, but I am not familiar with such data. Could you please give some advice about how to …
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Out of curiosity I had a look whether there are similar artefact lineages as BA.5.1.13 (see #1029), starting my search around the lab in question.
It turns out that BA.5.1.14 was designated with al…
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Your R scripts (in 7.edgeR) contain lines like these:
`setwd("~/Documents/Maestria/Taller_Bioinfo/pediatric_astrocytoma")`
`C
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https://life2cloud.com/cn/2017/08/pecan_data_portal_1/
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**Describe the bug**
When I install medaka in a conda env (anaconda fresh install, up to date), it fails after trying to solve environment, without any error.
**Logging**
```
root@jammy:/net/app…
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Hi,
After running traditional lumpy on normal and tumor reads seperately, I found all split read support (SR) are 0. Is this acceptable?
I haven't do svtyper yet.
Thanks.
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Dear Administrator,
scPDB dataset provides protein structures by mol2 format.
To generate machine learning features I used pybel, but Segmentation fault has been occurred for large protein file.
…