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It's great to see such a great tool, I realized in my own case that if I use a Bakta folder, the fna file needs to be the same as the folder name. For example if my folder is set to Ecoli_23_BAKTA, St…
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Hi,
The program seems to fail with the example datasets provided in the repo. I did a conda installation with the yaml file running on MacOS
Please help troubleshoot it.
`$mummer2circos -l -r …
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**Introductory Information:**
SDL3 is the upcoming major release of [SDL](https://github.com/libsdl-org/SDL) that breaks the ABI for the first time in over 10 years, in favor of dramatically improv…
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Hello. Currently running mac and downloaded harvesttools using conda.
When I run normal parsnp command, I get the following error:
base) > ~ % parsnp -g ~/GCF_PAO1_000006765.1_ASM676v1_genomic.gb…
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## Expected Behavior
I'm looking for a way to assembled multiple samples together when I have many non-paired reads as input.
## Current Behavior
I get an error like this: `Input /dev/fd/63 d…
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### Subject of the issue
Output seems incorrect.
### Your environment
On Linux, see output for version info
### Steps to reproduce
With this input:
```
$ head ~/t/eg.aln ~/t/eg_ref.fna
==>…
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-searching for indexed reference genome to decrease computational resources needed for indexing
- links :
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/001/405/GCA_000001405.15_GRCh38/seqs_for_a…
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Anyone who wants to help with fnaify development can help by testing the games on this list and reporting here or to me in PM/email if they work:
- ~~Blueberry Garden~~
- ~~CometStriker~~
- Craft…
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Hi! I am struggling to build a database. I'd like to resolve the following error.
```
/mnt/data1/centrifuge/indices$ make THREADS=8 p_compressed+h+v
Making: p_compressed+h+v: p_compressed+h+v
make…
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Hi,
I ran the command:
parsnp -r ref.fna -d fna_files/*.fna -p 20 -c -x --min-partition-size 40
Portions of the output is below:
(this is the first few lines)
/home/doy.pinili/.conda/envs/par…