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Hi there, thanks for this great tool!
About the demonstration of gwaslab, I have one little question about gwas analysis.
Certain gwas results may represent sproadic signals across whole genome, l…
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Test analyses with the three test genomes are occasionally showing only two. All genomes are in the 'data' variable of the 'createVisualization' function in result.html / visible in the REST framework…
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Hi.
When I performed a de novo assembly using HIFI, I obtained a genome size of 1.7 Gb. Since there was no prior information available about my sample, I decided to estimate the genome size. When …
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New file on step wise actions for the Chlamy plastidial genome analysis!
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Create a page with information of pros/cons of using different genomes for the analysis.
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Arabidopsis has a small genome, but it might have some more examples of splicing variation that would allow the pipeline to run through for the isoform analysis. Would need to put it in the genome lis…
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When running:
` sh ./run_coverage_analysis.sh /genomes/analysis/by_date/2015-10-23/0000074602/LP2000860-DNA_B04/coverage/LP2000860-DNA_B04.bw /genomes/analysis/by_date/2015-10-23/0000074602/LP200…
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Hi
I am running some whole genome analysis but I am getting the attached error
using mutect2 and sequenza
run this
`fit
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So I know this is not the GitHub repository for the pan-genome-visualization package but I am super lost regarding how to make the visualization work.
What exactly are the arguments to be used for…
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Dear Wei,
I am performing a conditional analysis on chromosome 6 on my lead SNP (in the HLA region, p value 10^-28). Conditional analysis runs smoothly but outputs SNPs with p values of 10^-280 wh…