-
Hi,
I've tried to generate an ale score for my assembly using the ale_score.sh script, but I get this error message and I can't figure out what's going wrong and where:
**Error message:**
> [main…
-
Roughly this is the idea: using a set of sequences (e.g. training set or generated set) we write first them in a temporary fasta file, using the obtained file (e.g. sequences.fa) call the kat hist fun…
-
Hello,
I'm trying to assembly a 500 Mb genome with PacBio reads. Our reads are relatively short, average 7 k bp, with poor coverage of 10 x. Flye results in an assembly around 170 Mb. I've presumed i…
-
Hello,
Thanks for a very useful tool.
I have sucessfully installed plassembler but in my case the pipeline does not finish as expected.
When I try to run:
plassembler.py -d /home/data_HDD2…
-
Hello,
I am running remora dataset prepare module on a SGE cluster (I have been able to run the same module on my PC on similar data with no problem, albeit a bit slow).
```
Traceback (most rec…
-
Update kmer_summary to use the parameters from a fitted NegBinom distribution to estimate the abundance.
-
Hi! thanks for taking your time developing this tool.
I'm getting the following error while trying to generate the kmer distribution:
python Bracken-master/generate_kmer_distribution.py -i braken/…
-
## We need a tool which takes a KMER catalogue and returns the counts of kmers.
The tools should take as input:
1. Reads (pre-processed)
2. Catalogue linking kmers and BGCs
The tool should out…
-
I have not been able to successfully use minos as a result of errors associated with dependencies. Particularly, the options passed to gramtools when running "minos adjudicator" seems to be incorrect …
-
I'm working on assembling a large mollusc genome and I'm having some trouble interpreting the genome scope results derived from a 150bp illumina library. I suspect the genome is full of repetitive el…