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gbouras13
/
plassembler
Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates
MIT License
49
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Plassembler stops at Processing Sam/Bam Files and extracting Fastqs
#53
ayoraind
opened
1 month ago
4
colab
#52
gbouras13
closed
2 months ago
0
Coverage stats in output
#51
CorentinEscobar
opened
3 months ago
1
v1.6.2
#50
gbouras13
closed
4 months ago
1
Directory Deletion in Plassembler Database Download
#49
andreagp96
closed
4 months ago
1
v1.6.1
#48
gbouras13
closed
4 months ago
0
v1.6.0
#47
gbouras13
closed
4 months ago
1
Provide additional options to be given to Unicycler
#46
chen1i6c04
closed
4 months ago
1
v1.5.1
#45
gbouras13
closed
5 months ago
1
Raven could not be called for assembly
#44
wanyuac
closed
5 months ago
2
Pipeline failed No plasmid_long.fastq output
#43
nbat64
closed
5 months ago
5
v1.5.0 update DB with PLSDB upgrade
#42
gbouras13
closed
7 months ago
1
v1.4.1
#41
gbouras13
closed
8 months ago
0
v1.4.0
#40
gbouras13
closed
8 months ago
1
v1.3.1
#39
gbouras13
closed
8 months ago
1
Plassembler v1.3.0
#38
gbouras13
closed
8 months ago
0
[request] allow specifying dragonflye (or bactopia) outputs?
#37
incoherentian
closed
8 months ago
6
searching against PLSDB as an additional option in plassembler
#36
gaworj
closed
8 months ago
2
Containerize Plassembler
#35
awh082834
closed
2 months ago
5
1.2.0 add docs
#34
gbouras13
closed
9 months ago
0
PR to speed up long read mapping #30
#33
gbouras13
closed
9 months ago
1
make dependabot security happy
#32
gbouras13
closed
10 months ago
0
Add Koverage
#31
gbouras13
closed
5 months ago
0
Optimize sam_to_fastq.py performance on large datasets
#30
fanvanf
closed
10 months ago
1
Optimize sam_to_fastq.py performance on large datasets
#29
fanvanf
closed
9 months ago
2
update publication with full citation
#28
gbouras13
closed
1 year ago
0
add manuscript
#27
gbouras13
closed
1 year ago
0
zenodo readme
#26
gbouras13
closed
1 year ago
0
docs
#25
gbouras13
closed
1 year ago
0
Refactor2
#24
gbouras13
closed
1 year ago
0
typos
#23
gbouras13
closed
1 year ago
0
Multiple chromosomes - combined reference for even copy number distribution
#22
gbouras13
opened
1 year ago
0
Refactor2
#21
gbouras13
closed
1 year ago
1
Refactor
#20
gbouras13
closed
1 year ago
1
Refactor
#19
gbouras13
closed
1 year ago
0
tar: Ignoring unknown extended header keyword
#18
Vini2
closed
1 year ago
1
1.1.0
#17
gbouras13
closed
1 year ago
0
1.1.0
#16
gbouras13
closed
1 year ago
0
1.1.0 update citations
#15
gbouras13
closed
1 year ago
0
1.1.0
#14
gbouras13
closed
1 year ago
0
Bump pymdown-extensions from 9.0 to 10.0 in /docs
#13
dependabot[bot]
closed
1 year ago
1
Determinism
#12
gbouras13
closed
1 year ago
0
Non Determinism Between Threads
#11
gbouras13
closed
1 year ago
4
fix samtools version
#10
gbouras13
closed
1 year ago
0
Conda Install error v1.0.0 no Samtools
#9
gbouras13
closed
1 year ago
1
minor readme typos etc
#8
gbouras13
closed
1 year ago
0
1.0.0
#7
gbouras13
closed
1 year ago
0
1.0.0
#6
gbouras13
closed
1 year ago
0
tidy benchmarking
#5
gbouras13
closed
1 year ago
0
1.0.0
#4
gbouras13
closed
1 year ago
0
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