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Hi,
I have a question about the FastaRecordReader class data-algorithms-book/src/main/java/org/dataalgorithms/chap24/mapreduce/FastaRecordReader.java
I have been trying to use it for large geno…
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Hi,
I am trying to use purge_dups on a recent nanopore-based mammal genome assembly which I found to be very complete (93% complete BUSCOs) but also to contain large numbers of complete duplicates …
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Hello,
I have tried a genome assembly with different parameters using 0.19.5-r587.
Parameters --h1 ${HiC_1} --h2 ${HiC_2} --hom-cov 45 -n 11 -D 10 --hg-size 1.6g output the genome sizes are 1.66…
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Hello, I am trying to build a database for taxor using ncbi refseq sequences from Prokaryotes, Archaea, Bacteria, Virus and Fungii (almost 50k orgamisms in total).
` taxor build --input-file ../../t…
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This feature is needed with larger viral genome (asfv). It will take times for the page rendering so much data, user needs to know that tool is still working not crashing
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This is a list of repositories for sourmash, software for rapidly searching and analyzing genomes and metagenomes!
The main repository - [sourmash-bio/sourmash](https://github.com/sourmash-bio/sour…
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OrthoFinder needs BLAST/Diamond output as multiple pairwise comparison files stored in a single directory. This is problematic for a large number of genomes - for 50000 genomes this would result in 2.…
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According to the docs:
```
Use PATRIC's Genome Annotation Service: https://patricbrc.org/app/Annotation.
For detailed instructions, Follow the instructions under the PATRIC genome annotations s…
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right now the biggest bottleneck in charcoal is `compare_taxonomy`, which does the summarization. It iterates over all of the input genomes and computes summary statistics for each one, and then outpu…
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Currently the NF1 GTF File matches the NM_001042492.2.fasta file.
However, I am still getting this error :
ERROR ~ Error executing process > 'STAR_GENOMEGENERATE (NM_001042492.2.fasta)'
Caused …