issues
search
CFIA-NCFAD
/
wgscovplot
The Whole Genome Sequencing Coverage Plot (wgscovplot) is a tool to generate HTML Interactive Coverage Plot given coverage depth information, variants and DNA Gene features
Other
17
stars
6
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
update README with correct repo link
#58
kew24
opened
1 month ago
0
fix: Clair3 VCF parsing
#57
peterk87
closed
5 months ago
0
Set min version of Pydantic to 2.0.0
#56
peterk87
closed
8 months ago
0
AttributeError: 'SegmentedGenomeDB' object has no attribute 'model_dump'
#55
peterk87
closed
8 months ago
1
Reference sequence is assumed to be available from NCBI if not found in input directory
#54
peterk87
opened
8 months ago
0
Chunking or selection of samples for large analyses
#53
peterk87
opened
8 months ago
0
Release 1.0.0
#52
peterk87
closed
8 months ago
0
Account for different segment numbers in Influenza B and Influenza A viruses
#51
peterk87
opened
8 months ago
0
SolidJS, Hatchling update
#50
peterk87
closed
8 months ago
0
ValueError: Length mismatch: Expected axis has 0 elements, new values have 10 elements
#49
nrminor
closed
8 months ago
13
Installation fails because of missing C++ header file
#48
nrminor
opened
9 months ago
2
Migrate to Hatchling for building Python package
#47
peterk87
closed
8 months ago
0
Major Refactor
#46
nhhaidee
closed
8 months ago
1
WIP: Major refactor
#45
peterk87
closed
8 months ago
0
Option to toggle x-axis label
#44
nhhaidee
closed
8 months ago
1
Clean, unify code and standardize code
#43
nhhaidee
closed
1 year ago
0
Add the supports for segment virus
#42
nhhaidee
closed
2 years ago
0
Release v0.2.1
#41
nhhaidee
closed
2 years ago
0
Fixed issues of tooltips displayed incorrectly due to samples list being reversed
#40
nhhaidee
closed
2 years ago
1
update github workflow
#39
nhhaidee
closed
2 years ago
0
Update package requirements for Typer
#38
nhhaidee
closed
2 years ago
2
bump version v0.2.0 and clean code
#37
nhhaidee
closed
2 years ago
0
Error: Uncaught TypeError: Cannot read properties of undefined after toggling amplicon plot
#36
nhhaidee
closed
8 months ago
2
Variant heatmap changed according to selected samples
#35
nhhaidee
closed
2 years ago
1
Enhancements for release 0.2.0
#34
nhhaidee
closed
2 years ago
0
Add supports for ASFV and update JS dependencies
#33
nhhaidee
closed
2 years ago
0
Add spinner or loading page when tool is busy on rendering data
#32
nhhaidee
opened
2 years ago
2
Medaka VCF patch fix
#31
peterk87
closed
2 years ago
2
Non-dev JS dependencies?
#30
peterk87
closed
2 years ago
1
Get max depth for each sample separately
#29
peterk87
closed
8 months ago
1
Allow user to specify low coverage threshold
#28
peterk87
closed
8 months ago
1
Remove your email from Entrez.email and replace with CLI options
#27
peterk87
closed
2 years ago
0
Automatic GFF and reference FASTA retrieval
#26
peterk87
closed
8 months ago
2
Toggle show amplicon bars in coverage plots
#25
peterk87
closed
2 years ago
0
Automatically determine if amplicon data is present
#24
peterk87
closed
2 years ago
0
Preparation for first release
#23
nhhaidee
closed
2 years ago
0
Numeric input text boxes instead of sliders
#22
peterk87
closed
2 years ago
0
UI/UX Enhancements
#21
nhhaidee
closed
2 years ago
0
Coverage comparison table changes
#20
peterk87
closed
2 years ago
0
Smaller font for amplicon depth text and show in rect bar shape
#19
peterk87
closed
2 years ago
0
Plotting options UI/UX enhancements
#18
peterk87
closed
2 years ago
0
Adjusting subplot height vs margin needs to be more intuitive
#17
peterk87
closed
2 years ago
0
[Enhancement]: This display of Variant Heatmap should be adjusted automatically
#16
nhhaidee
closed
2 years ago
0
[Enhancement] This display of Variant Heatmap should be adjusted automatically
#15
nhhaidee
closed
2 years ago
0
update devDependencies, echarts to version 5.3.0
#14
nhhaidee
closed
2 years ago
0
Use Jinja2 tojson filter to transform Python values to JS values
#13
peterk87
closed
2 years ago
1
Medaka VCF support
#12
peterk87
closed
2 years ago
0
NCBI accession or GFF for specifying genetic features to show with coverage plots
#11
peterk87
closed
2 years ago
2
Improve the performance of the chart when adding and removing samples
#10
nhhaidee
closed
2 years ago
0
Enhance chart's behaviours when render env changed, samples to plot changed or dark mode toggled
#9
nhhaidee
closed
2 years ago
0
Next