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I think this is fixed in this branch: [infinite-succession-loop-fix](https://github.com/jcrozum/nfvs-motifs/tree/infinite-succession-loop-fix), but I need to do more testing.
There were two issues:…
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Hello! Thank you guys for the amazing GRN analysis package! I am eager to use it, but one of the key functions keeps on returning an error, regardless of which motif matrix or function parameters I us…
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Hi.I'm trying to use MINI-EX，but It report an error
```
N E X T F L O W ~ version 22.04.0
Launching `miniex.nf` [amazing_varahamihira] DSL2 - revision: 7bd79d770f
Motif-Informed Network I…
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Request from @edgartdata:
Can you please vend a new/additional LIDO text entry to the test BL? Painting conservation has a GRA who is writing short technical descriptions for the online catalog and…
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https://lablab.ai/event/audiocraft-24-hours-hackathon/introspectiwavevisioneers
It's exciting to see how lablab.ai is organizing the AudioCraft 24-hours Hackathon, diving into the realm of audi…
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Hello
I am working on multiple conditional data. I run the ATACorrect and ScoreBigWig for each sample based on the peak and bam files. Now I would like to compare both the condition in order to fi…
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Hi,
I wish to run scMTNI with data where the prior matrix is already generated from the data. The input files that I have includes the gene expression data (gene by cell) and the prior GRN matrix (…
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Hello,
I have a few questions that are not really related to each other.
First: I always assumed when training and running the model on new data, you had to know the reference in each case in or…
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https://mp.weixin.qq.com/s/5rZ5yLXaLDVAtQbtGHAHoQ
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Hey thanks for the package. I was reading the dictys paper on bioarxiv and it says
To reconstruct a context specific GRN for each group of cells, Dictys first infers TF binding sites in regulato…