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I am just running v0.9.2 and it gets somewhat stuck in
```
nextflow run replikation/poreCov -r 0.9.2 -profile local,singularity -w work --update --cachedir /scratch/singularity/poreCov --fasta '*…
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Process AlignFastq2Bam currently runs bwa-mem2 alignment and follows this with SAM conversion. These processes should be independent to be consistent with the 'best practices' for pipelines where each…
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[XX.nextflow.log](https://github.com/nextflow-io/nextflow/files/6213818/XX.nextflow.log)
[command.run.txt](https://github.com/nextflow-io/nextflow/files/6213822/command.run.txt)
### Expected b…
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Hi, I'm trying to use mhcquant with workflow docker profile but when I try to star the pipeline appears this error message:
WARN: unknown format for entry /Users/presta/null in provided sample sheet.…
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singularity is currently being tested as part of the Xpra istallation #186
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Hello,
The following error message is written to the AWS CloudWatch logs for any Alpine based docker image when a nextflow job is submitted to AWS batch.
bash: /home/ec2-user/miniconda/bin/aws…
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Revisiting an old topic. Previously, we used [Singularity Hub](https://singularity-hub.org/) (a.k.a. _Singularity Container Registry_) to host Singularity images directly. This is good because:
* B…
ewels updated
3 years ago
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We should put GEMmaker in nf-core to bolster it's finability and to be part of the community of workflows.
https://nf-co.re/developers/guidelines
## Requirements
- [x] MIT License
- [x] Soft…
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Hi @lvarin, once you have time could you please update [the Nextflow pod image](https://github.com/lvarin/nextflow-tes-okd/blob/master/Dockerfile):
* To include the latest Nextflow version (21.01.0-e…
tskir updated
3 years ago
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Review CWL docker hints and the Dockerfiles.
Missing ones:
- [x] fasta rename/restore
- [x] hmmscan_format_table
- [x] IMG VR - Blast
- [x] Krona