nf-core mhcquant issues

nf-core / mhcquant

Identify and quantify MHC eluted peptides from mass spectrometry raw data

https://nf-co.re/mhcquant

MIT License

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issues

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Add idmassaccuracy module and QC plot

#332 jonasscheid opened 1 week ago
1
Global-FDR support

#331 jonasscheid opened 1 week ago
0
Create spectrum library from DDA runs

#330 jonasscheid opened 1 week ago
1
Add chromatogram extractor module

#329 jonasscheid closed 2 weeks ago
1
Add MS1 Chromatogram to multiQC

#328 jonasscheid opened 3 weeks ago
0
Add OpenMS IDMassAccuracy module

#327 jonasscheid opened 3 weeks ago
1
Incorporate suggestions for 2.6.0

#326 jonasscheid closed 3 months ago
2
Release 2.6.0

#325 jonasscheid closed 3 months ago
2
Update docs

#324 jonasscheid closed 4 months ago
1
Add support to handle (tdf) archives

#323 jonasscheid closed 4 months ago
1
Add option to specify MS2PIP model directory

#322 jonasscheid closed 4 months ago
1
Remove legacy components

#321 jonasscheid closed 4 months ago
1
Merging template updates

#320 jonasscheid closed 4 months ago
1
Important! Template update for nf-core/tools v2.14.1

#319 nf-core-bot closed 4 months ago
0
Important! Template update for nf-core/tools v2.14.0

#318 nf-core-bot closed 4 months ago
1
Add cache management for `ms2rescore`

#317 MajoroMask closed 3 months ago
0
Fix validation for bruker files

#316 jonasscheid closed 6 months ago
3
Bump ms2rescore container with new timsTOF model

#315 jonasscheid closed 6 months ago
1
Fix containerOptions with singularity

#314 jonasscheid closed 7 months ago
0
Merge template 2.13.1

#313 jonasscheid closed 7 months ago
1
Important! Template update for nf-core/tools v2.13.1

#312 nf-core-bot closed 7 months ago
0
Merge template 2.13

#311 jonasscheid closed 7 months ago
1
Refactor for release 2.6

#310 jonasscheid closed 7 months ago
1
error from '-profile test'

#309 sundysun99 closed 4 months ago
3
URGENT: pin nf-validation version

#308 nvnieuwk closed 5 months ago
4
Important! Template update for nf-core/tools v2.13

#307 nf-core-bot closed 7 months ago
0
Add tests for bruker files

#306 jonasscheid closed 3 months ago
1
"No significant hits found" message (dev branch)

#305 steffenlem closed 3 months ago
1
Merging template updates

#304 jonasscheid closed 8 months ago
2
Important! Template update for nf-core/tools v2.12

#303 nf-core-bot closed 8 months ago
0
Fix docker container permissions for ms2rescore

#302 jonasscheid closed 7 months ago
2
mzml renaming and fixed ion parameters

#301 steffenlem closed 9 months ago
1
Merge template updates

#300 jonasscheid closed 9 months ago
1
Fix decoydatabase creation

#299 jonasscheid closed 9 months ago
1
Test multiple variable and fixed modifications

#298 jonasscheid closed 9 months ago
1
Expose deeplc calibration set size param

#297 jonasscheid closed 9 months ago
1
Port local OpenMS modules to nf-core modules

#296 jonasscheid opened 9 months ago
0
Important! Template update for nf-core/tools v2.11

#295 nf-core-bot closed 9 months ago
0
DEEPLC and MS2PIP doesnt work with multiple variable modifications

#294 yannic-chen closed 3 months ago
6
Add ms2rescore module, remove ms2pip and deeplc modules

#293 jonasscheid closed 9 months ago
3
Alter the tsv outcome of quantified data

#292 marissaDubbelaar closed 11 months ago
1
Alter tsv outcome

#291 marissaDubbelaar opened 11 months ago
1
Better multiQC report

#290 marissaDubbelaar opened 11 months ago
0
Re-itterate over the contributors

#289 marissaDubbelaar closed 11 months ago
0
Replace DeepLC and MS2PIP wrappers with MS2Rescore

#288 jonasscheid closed 3 months ago
0
Create only one decoy database if no vcf_sheet is given

#287 jonasscheid closed 3 months ago
0
Remove writing out all peaks when using Ion Annotator

#286 jonasscheid opened 12 months ago
0
Final changes for release 2.5.0

#285 jonasscheid closed 12 months ago
1
Release 2.5.0

#284 jonasscheid closed 12 months ago
3
Use IDfilter when OpenMS 3.1.0 is released instead of pyopenms IDfilter

#283 jonasscheid closed 3 months ago
0