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See https://github.com/monarch-initiative/mondo/issues/760
However, the xref issues in this ticket don't fully explain:
https://beta.monarchinitiative.org/disease/OMIM:130010#gene
Here we see…
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**Is your feature request related to a problem? Please describe.**
Currently, the there is one example mentioned in the main [project page](https://csbiology.github.io/FSharpGephiStreamer/exampleAnal…
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For my current project I'm working on a comparison of various strains within the same species. I used the `--strain` option to annotate each of the genomes to be compared.
When running `funannotate…
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This simple RegEx pattern will allow for spellchecking every single English word.
Nebula should loop through every word on every pageload and verify each word is spelled correctly. Also on the admi…
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I would like to try and implement an NCIT parser that will wrap the bare OBO or OWL parse and that can be instantiate with a series of constants that will instruct the parse which portions of NCIT to …
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**org.monarchinitiative.phenol.base.PhenolException: Did not recognize RelationshipType: http://purl.obolibrary.org/obo/RO_0000087**
at org.monarchinitiative.phenol.ontology.data.RelationshipType.…
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Robot converts an OWL ontology to Turtle for presentation to Jena for SPARQL queries. It appears the ontology goes into an (unnamed?) graph.
Would it not make sense to make the whole import chain q…
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We want to have uniform way of representing vocabulary which should include support for description, synonym and relationships.
robes updated
6 years ago
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Currently OLPG only parses obo files. It would be useful to use OWL files since obo format is deprecated. However, OWL is difficult to work with, so we should have a bridge layer that maps OWL constru…
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The scope of SWEET overlaps with existing external vocabularies in a number of areas.
While SWEET has the distinct advantage of providing a unified vocabulary for much of the physical natural scienc…