-
**Project description**
AlphaFill is an algorithm based on sequence and structure similarity that “transplants” missing compounds to the AlphaFold models. By adding the molecular context to the prote…
-
How do I backmap from a density to the protein structure? e.g. I have enrichment for cholesterol in the lower right of the protein, but where does that density correspond to in the structure? Comparin…
-
Hi, I'm curious if DEqMS allows for the possibility of fine tuning the linear mixed model that it runs on each protein. Basically, my problem is that I am working with samples from a wild population …
-
I'm attempting to run the example generate_protein_meshdata.py listed [here](https://github.com/jaredsagendorf/pnabind/tree/master/examples/generate_mesh_data#processing-for-prediction) using a fresh …
-
We have built a mutant library for cucumber and have completed resequencing some of the individual plants, finding a number of proteins with non-synonymous mutations. We have translated these proteins…
-
Since I can run [Predicting Protein Monomers example](https://github.com/baker-laboratory/RoseTTAFold-All-Atom?tab=readme-ov-file#predicting-protein-monomers) well, I tried [Predicting Covalently Modi…
kimdn updated
7 months ago
-
Hello!
I have a query concerning a specific aspect of protein-ligand systems. In cases where both the protein and ligand are identical, but the final conformation varies due to sampling of the protei…
-
**Command that I ran:**
```
asap-ml build-dataset schnet --exp-file unknown_error.json \
--structures '*_complex.pdb' \
--ds-cache ~/dataset_cache_local.pkl \
--xtal-regex '(?
-
Dear generatebio github,
I have gpu node that is not connected to the internet and thus need to run chroma offline.
Can you help me how to set up and call out the downloaded weight?
I appreciate yo…
-
@GemmaTuron in this point you are suggesting to improve the documentation available as a help in each function or you are referring to the generation of documentation in GitBook?