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I am trying to get some predictions of protein-protein complexes.
As "positive" control, I use prediction for a complex for which the cryoEM structure was solved and published in second half of 2022.…
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Pdb is a database of protein with 3d structure.
The website contains a 3d viewer for each protein.
OBJECTIF :
create a 3d viewer as a QWidget. The easiest solution would be to use a QWebWidget…
dridk updated
2 years ago
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We are benchmarking folding methods on predicting structures of proteins containing unnatural amino acids. We saw that you mentioned 'prediction for unnatural amino acids is coming soon' on Github, so…
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* PIGT version:
* Python version: 3.9
* Operating System: centos
### Description
Ran:
```
neuralplexer-inference --task=batched_structure_sampling \
--input-receptor …
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Hello!
I have a query concerning a specific aspect of protein-ligand systems. In cases where both the protein and ligand are identical, but the final conformation varies due to sampling of the protei…
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Hi, I have the following problem.
I want to create a simulation in which, in addition to the protein structure, there are several different small ligands. For this purpose, to assign them a force fie…
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Hi everyone,
In this project, we have a bunch of experimental data on the binding of small molecules to WDR91. Many of the molecules are in nice matched pairs, in which the molecules differ by a si…
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i have a protein structure with some loops missing amino acids. Is there a way to use colabfold to model these loops?
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I used spaln to annotated a gene structure in de-nove assembly using a homologous protein, but spaln report error (Segmentation fault (core dumped)). The command as follow
spaln -Q3 -O0 -KP -C1 -M100…
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I encountered the following error while running the program. How can I resolve it? Thanks
Traceback (most recent call last):
File "../../../PLANET_run.py", line 174, in
predicted_affinit…