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https://mp.weixin.qq.com/s/j4zezzyiNRhZGKisUWPQ7w
ixxmu updated
4 months ago
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Hello,
I am wondering what the most effective method of combining sc-RNAseq UMAP clusters (currently generated in Seurat, but could be done in python with sklearn's UMAP method if needed) and count…
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貼吧活動:(請查閱 [SARS-CoV-2 Timeline by 2020.02.21](https://github.com/agorahub/_meta/blob/agoran/theagora/sari/Memorandum_2020-02-21_SARS-CoV-2-Timeline_Nathan.pdf?raw=true), by Nathan :cloud: )
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Dear CellDancer team,
Following the instructions I ran into an error after estimation of RNA velocity when running function cd.pseudo_time.
The call is:
```
# estimate pseudotime
cellDancer_d…
aghr updated
8 months ago
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Hello,
I am attempting to combine anndata objects that are outputted from Seurat (which contains the UMAP scRNAseq clusterting) and Velocyto (which contains the count matrices) so that I can perfor…
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Hi,
I ran into a bug at the last step. It seems it is caused by the loompy. But I followed the install structions to install every package and the loompy is installed from source (loompy==2.0.13).…
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https://mp.weixin.qq.com/s/sHd6iz5JenKJV64pbMDxaA
ixxmu updated
4 months ago
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Hello,
Thanks for developing scvelo.
Just some background, I wanted to perform RNA velocity analysis on my object but I had been working in Seurat initially. I performed some data conversion from…
jjia1 updated
7 months ago
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Dear Spencer,
Thanks so much for sharing your great work. I have read your paper and i am wondering what gene-module was knockouted in the knockout_2batches dataset.
Thanks so much for your kind…
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https://mp.weixin.qq.com/s/tkvNg_xnLem7GoWgabwFxw
ixxmu updated
9 months ago