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Hello,
MACS2 stalls at the following line:
```
#3 Pre-compute pvalue-qvalue table...
```
I have two BAM files, one converted to BAM from Bowtie2 output and the other which has underwent some proces…
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Hi, first of all thank you for developing/maintaining Leafcutter which is among my favourite tools definitely!
I have come across with an issue while looking at reads for one sample on IGV. I know …
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When searching for fusion genes using Arriba with a custom GTF file that extracts only the representative Ensembl ID transcripts, a large number of false positives (mostly transcripts fused at interge…
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Hello. Thanks for your excellent work!
I find your work very interesting and the motivation is very sound. The experimental results also prove that the work is effective. But I have some confusion …
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Hello,
I would like to go through the tutorial, but the link (www.readthedocs.io/mubind) for single-cell genomics data in the data availability section of the paper does not seem to work.
Could…
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Dear Bambu team,
thank you making such an amazing tool available!!
I was wondering if you have come across and/or thought about how bambu could be implemented to quantify the transcription of tr…
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## description of the bug
I encountered the bug when I try to download the example data of bone_marrow following the tutorial section **Get Started with CellRank**, using Jupyter notebook. And the …
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# Lexical Schemas
### The Problem
A lot of mistakes with Lexical are caused by developers adding nodes where they shouldn’t.
Schemas are an API proposal that’s designed to add guardrails aro…
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With the latest image `docker://stomics/saw:06.1.0`, `mapping` prints a help message that refers to a program `bcSTAR` that does not exist in the image:
```
Singularity> mapping
Usage: STAR [optio…
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Hello,
I have a question: according to Oxford nanopore their last cells produce very accurate reads. Does "map-ont" still work as the best setting to map those reads? I am asking because the manual…
ghost updated
1 month ago