-
The majority of reads are either ignored because they do not overlap with a feature or they are multi-mapped.
Check strand used to count reads.
Use abundant 3'UTR rather than abundant (for whole…
-
**Are you using the latest release?**
Yes
**Describe the bug**
When no gene gets filtered out after EVM, the clean EVM gff is not written, generating an error later.
The bug comes from this line…
-
**Are you using the latest release?**
funannotate v1.8.3
**Describe the bug**
0 prediction from SNAP
SNAP prediction failed, moving on without result
**What command did you issue?**
funannot…
Oixil updated
2 years ago
-
Hello Oliver,
I'd like to use TEtranscripts to analyze TE in rice (Oryza sativa japonica), however I don't know how to get the TE GTF and index files in the given website, while most of the files i…
-
Hello Hyphy team,
I am a new user of GARD and I am currently analysing the LTR sequences of LTR retrotransposons. The LTRs are non-coding sequences, and so, based on other posts here for running GA…
-
Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/functionalgenomics/atena
Confirm the following by…
-
Dear
Greetings,
I'm willing to use the pipeline to identify TEs in Plant genome (RawData) installed from SRA.
My question regarding the Input:
Reference genome: the genome can be scaffold level?…
-
Hi Shujun,
I have annotated the B73 maize genome with EDTA v1.8.5 and get the following results:
However, there is a big gap between this result and the result shown in the TIR-learner artic…
-
**Submitting author:** @bramvandijk88 (Bram van Dijk)
**Repository:** https://github.com/bramvandijk88/cacatoo
**Version:** v1.0.0
**Editor:** @Bisaloo
**Reviewers:** @emilydolson, @TimKam
**Managing…
-
Hi Jon,
I compared the gff output under predict_results/ with previous annotation results and I found some genes missing from funannotate results. I am able to find such missing genes from predict_…