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Description of the [problem](https://github.com/CSB5/OPERA-MS/issues/25#issuecomment-1947891847)
1) Question regarding memory: I ran
> /export/opt/sw/opera-ms/0.8.3/OPERA-MS//tools_opera_ms//ma…
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Hello All,
I have been working on a feature for maintaining a 'target_number_of_species' within a defined min/max range. It achieves this by altering the 'compatibility_threshold' each generation.…
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Hi, I am using the code provided in the tutorial and cannot to generate both heatmaps using the following code
```
heatmap.3(t(as.matrix(CNA.test[,4:ncol(CNA.test)])),dendrogram="r", distfun = fun…
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Hi,
I am trying to use PlantClusterFinder. I am working on plant genome and wanted to use this tool to search gene clusters of my interest.
Therefore, I downloaded the lattest release of Plant…
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Hi,
I tried using `--genome` in PLINK to calculate IBD based on a selection of SNPs (in my case 44). Turns out, that in my data:
- 7 SNPs have haploid genotypes
- when merging GWAS data of the sa…
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Hello,
I am trying to annotate a file of protein calls (i.e., a Prodigal metagenome output file) using microbeannotator. My file is 750M with 2,000,000 reads and an average sequence length of 275 …
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Hello, it looks like the hybrid assembly approach outlined in the documentation is not supported for the 'ddrad' datatype in v0.19 and v0.20 (as is removed from the params file option). is this functi…
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Hi @jlevy44 , I ran polycracker test_pipeline with my genome (with same name algae.fa) in test_data/test_fasta_files folder. It executed all the sub-program but after that show following error:
```…
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What's the expected memory usage per genome for Dashing2? I'm trying to run it on 500,000 viral isolates, and am running out of memory even with 500GB
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Hi ~
Thanks for developing this handy program.
I am working on a haploid fungus and wondering if I can use this program as well.
I have 12 samples and generate these two files at last. It seems l…