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As far as I understood you don't have predefined sequences for adapters:
"By searching the best overlapping of each pair, AfterQC automatically detects and cuts adapters for pair-end data, with no …
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Dear MicrobeAnnotator team,
I tried to fix the databse with this command:
```
microbeannotator_db_builder --step 9 -t 12 -m diamond --bin_path /net/sgi/metagenomics/thkuo/bin/lib/diamond/ -d /ne…
thkuo updated
5 months ago
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Hello,
I'm trying to use metaWRAP to assemble a metagenomic data set (~80GB), and it cannot get past the assembly step. Here is the code and the log file:
```
$ metawrap assembly -t 14 -m 386570…
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Need to update. Current text from 2012:
There will be four key output from the EMP:
1. Gene Atlas (GA) is a centralized repository and database for all information acquired during this study. This re…
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While adding some tests to check for the GFF output (in order to fix #18) I noticed that the start score of some genes were deviating from the Prodigal reference results. This was not verified before …
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### Title
16s Metagenomic analysis of Gut Microbiome
### Leaders
Dipankar Bachar
### Collaborators
_No response_
### Brainhack Global 2022 Event
Brainhack Marseille
### Projec…
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I assume that npScarf is designed for Single species bacteria. Anyhow, I want to check how it works for my bacteria in metagenomics sample. With Illumina MISEQ data, I did the assembly with SPADES …
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## The below issue(s) questions were raised by Pascal.
Hi,
As already discussed, there is little reason to work with the OSD raw reads (other than technical or QC questions), so within the scope of …
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This (along with Node & Platform) are requested information in various Node SDP process, but only Node and Platform are supported by biotoolsSchema hence bio.tools.
Issue is to add enum for ELIXIR …