-
Please provide as much information as you can:
* **GO term ID and Label**
*
* negative regulation of cysteine-type endopeptidase activity involved in apoptotic signaling pathway (GO:2001268)
…
-
I have tried to fix this but looks like funannotate compare needs .faa files that doesnt recognise even when I place them in the same directory
/pangenome_out# more funannotate-compare.log
[08/22/…
-
Dear all,
The proposal has been made to obsolete
GO:0000422 autophagy of mitochondrion
GO:1903146 regulation of autophagy of mitochondrion
GO:1903147 negative regulation of autophagy of mit…
-
I used the protein files provided by bacmet database to build a custom database of args_oap, extracted the GI_number of the protein database fasta file according to the tips of github, ![2](https://gi…
-
Hi,
I am attempting to annotate a customized VCF file using NCBI's GFF and (fna) FASTA files for the Newcastle disease virus (https://www.ncbi.nlm.nih.gov/datasets/genome/GCF_004786615.1/). However, …
-
I noticed that I was not getting any indels back when running the current docker against my own guides, so I ran it against the test guides and still did not get any indels. This included indels that…
-
currently, it seems to only handle genomes.
-
error running the processConservation
Hi Idan,
I have a problem when I run processConservation, I don't know how to resolve the error is :"Subroutine overlap redefined at scripts/Mapping.pm line 364…
-
## Describe the issue
We noticed a variant, a single base insertion after the first position of a gene, getting annotated as an upstream_gene_variant with respect to that gene. The distance is then…
-
As mentioned in https://github.com/PHI-base/curation/issues/91 there may be cases where it is not initially clear whether to use the GfG or PHI phenotype workflow.
It may be useful in the future t…