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(Please correct me if I am misunderstanding any of these components! Thanks @swails for pointing out some of this info appears in the manual.)
The **OpenMM System Tests**, used to test release candi…
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Thank you for making this wonderful package to facilitate RNA velocity analysis. I do have some confusion regarding the new workflow 'nac' (in v.0.28.0) and how it is generating intronic sequences.
…
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Hello!
When I used the reslut of examples/03_balde to run the command:
compare_designs BAR_USC.yaml outputs_aero/blade_out.yaml --labels Init Opt
The error occurred:
AttributeError: …
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Hi authors, thank you for this amazing package. I would like to clarify my interpretation of the phase portraits that I obtain in my analysis. I have snRNA-seq + snATAC-seq multiome data of stem cell…
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Hi,
I used the example data to try reproducing the demo pipeline. With the adata_result generated, I used it for computing velocity stream and the error happened after running mv.velocity_graph(). …
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Hi, I encounter the same problem as in https://github.com/facebookresearch/LAMA/issues/10.
And I found the reason why 2 examples are filtered is that the `obj_label` are `1970s` and `1990s`. And in `…
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Hello CellRank team!
I am quite new to cellrank and recently made some lovely RNA velocity plots which I would love to save to my specified directory.
I noticed there isn't a "save" argument for…
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https://www.jieandze1314.com/post/cnposts/80/
gygys updated
9 months ago
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Hi dear development team,
I am using scvelo to do RNA velocity analysis for two samples. Here is my code,
adata = sc.read_h5ad("processed_seurat_object.h5ad") #this is a combined h5ad object, i…
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pancreas_sub