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Hi-
I am looking to run 10X Multiome (sc paired RNA & ATAC) and I want to multiplex my samples and use a SNP array or WGS to demultiplex using SouporCell. I have not run the experiment yet so I was…
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I noticed starsolo was designed to work in many different platforms of scRNAseq, e.g. 10X/Indrop/SeqWell. However, I don't find the corresponding category for single cell combinatorial indexing RNA …
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https://fairsharing.org/FAIRsharing.j9y503
It would be good to add scRNAseq resources to list of databases using CL:
* EBI scAtlas (https://www.ebi.ac.uk/gxa/sc/home)
* HCA/DCP data portal (ht…
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I've added the Sample Collection chapter. It is currently just a place holder, but I'm going to add information about collecting samples for DNA, RNA, and microbiome (maybe). @sdhutchins I'm also go…
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May i ask 1 question:
if data is already pseudobulk object from scRNAseq data with logCPM value, how can i change it back to a seurat object with counts value? Can i still use above method to turn …
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Hello,
I'm adding STARsolo to [nf-core/scrnaseq](https://github.com/nf-core/scrnaseq) and am realizing that there isn't support in MultiQC for the AlevinQC module. Would it be possible to "simply" em…
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Hi @drbecavin,
I am an active contributor to the [nf-core](https://nf-co.re/) project and have been working on the [scRNA-seq](https://github.com/nf-core/scrnaseq) and [spatialtranscriptomics](htt…
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Hello!
CellxGene is by far my favourite viewer and kudos for doing a great job developing it and maintaining it!
What are the odds of extending cellxgene to handle other data modalities? I am no…
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Dear developers,
Congratulations and thank you for developing such excellent tool.
I was wondering that would Augur still works if I have two conditions sequenced by different protocols? For example…
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Dear @sunway1999 @pllittle @liusi2019
Thanks for your beautiful codes and the CSeQTL paper!
I want to run some example data to make sure that I can use CSeQTL correctly.(PS. our lab own CMC and…