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Hello
I am trying to install htslib-1.3.1 on Ubuntu 12.04 using ./configure and make but getting the following error message. Also I have verified that zlib1g-dev is installed and up to date on the se…
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I use docker to run smc++ , an error occurs as below, I don't konw what the problem is, anyone has suggestions?
Traceback (most recent call last):
File "/usr/local/bin/smc++", line 11, in
lo…
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Hi,
Our lab is having trouble installing RUTH, and have tried different gcc compilers and older versions of htslib. We're wondering if it is related to the recent updates to RUTH, but we don't hav…
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make all-recursive
make[1]: Entering directory '/beegfs/home/wangshouchuang_L/workspace/09.tea/01.methylation/soft/BatMeth2'
Making all in src/mealign
make[2]: Entering directory '/beegfs/home/wan…
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Perhaps this is just a documentation issue, but I am having problems (memory issues) with `hts_idx_set_meta`. Here is the source:
```C
int hts_idx_set_meta(hts_idx_t *idx, uint32_t l_meta, uint8_t…
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Hi again! I was hoping you might be able to trace the root issue of my problem. I am trying to plot a heatmap using a gff file for signal (this file is large 9.1Mb). I tried running it on my local mac…
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**Is your feature request related to a problem? Please describe.**
@pontussk suggests including the possibility for users to run PMDtools with the following flag [`--platypus`](https://github.com/p…
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I'd like to programmatically generate VCF records as part of my unit tests for various tools. In some cases I'll create new records then write them to disk to test the tool end to end (versus just pa…
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I just fixed the File Not Found (issue #86) a bit (see my pull request), but whereas it seems to now be able to read sam and bam files, it can only write sam, not bam:
`/Users/philip/tmp/atropos.f…
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Hi,
I tried to run TRUST4 on paired end Bulk RNA-Seq Fastq files, but it failed with "139 at ./run-trust4 line 54" as shown in the screenshot below. Could you tell me what this error message means a…