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### Setup
```python
[GCC 7.3.0]
CPython
Linux-4.4.0.17134-Microsoft-x86_64-with-debian-stretch-sid
1.70
```
when trying to run fprotdist via the [Bio.Emboss.Applications-module](https://biop…
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I'm opening this issue to track known issues with running the tutorials on Colab and discussing potential solutions:
- Colab installation is slow: The tutorials currently install deepchem as in thi…
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```
04/10/2022 19:46:59:463 Welcome to InterProScan-5.55-88.0
04/10/2022 19:46:59:463 Running InterProScan v5 in STANDALONE mode... on Linux
04/10/2022 19:47:13:167 RunID: iZ8vb4s0jlsfk2x77wsvruZ_2…
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Much of the pipeline proceeds until seq is translating presumably detected Ig sequences. It repeatedly terminates with the "Codon 'GET' is invalid" error
pdoris$ python run_iterative_igdetective.py…
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Hi I was hoping you could clarify a warning label that I got:
>fastp --in1 /Users/beatrizamorim/Desktop/mtDNA/data/DEMI115_R1.fastq.gz \
--in2 /Users/beatrizamorim/Desktop/mtDNA/data/DEMI115_R2.f…
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In the script, "x01_process_fastqs.py"
middle_expr = '(?
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Hello,
We get the errors below when downloading the Win 11 drivers for the new OptiPlex 7010. We also notice that it tries to create the Win11 folder, but it is not named properly. Even if we renam…
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while working on https://github.com/sourmash-bio/sourmash/pull/2225 and making sure that `plot` will work with both similarity and distance matrices, I ran a few comparisons with the 64 genomes from p…
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# To Do
- [x] Literature review of spliced short read alignment methods (is anyone using Minimap2?)
- [x] Review Rust libraries for alignment and minimizers
- [x] Make stand-alone command line Ru…
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In order to improve the informativeness of the TaxI3 output, one important additional features would be the support for phylogenetic trees in order to identify among the different species the direct s…