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### Ask away!
Dear community,
I am quite new to this, I have performed a transcriptome analysis using epi2me labs app,
My question is, what should i do after ? I have several files and I don't k…
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I have around 300 phage genomes. and I wish to check the spacers in these many genomes. what should be the command line to execute the analysis.
**python CL_Interface.py -i TestGenomes/KJ489400.fas…
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Hi, I am trying to reproduce the result of apa analysis of nanopore to use for further research.
I am following the pipeline of Simpson_Barton_FPA_NLRs github code.
Now, I have bam file and trying…
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Hello,
I'm currently analyzing a substantial dataset comprising 11,743 genomes of different _Enterococcus_ species, including over 20 outgroup genomes from the same family and order. because of the…
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Hi, thank you for developing Control-freec.
When I was running the gccount program, I encountered the following error message:
> Unable to open fasta file for chr 248956422 in folder /home/user/re…
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Hi,
What is your suggestion to extract the representative genome for a meta_ and ext_ mOTUs?
E.g., if we download meta_mOTU_v3_12240, it downloads 4361 genomes (even if we only choose one of th…
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Hi!
I am running PASA with a 5 Gb genome size (alignment assembly step). I cannot make it working with pblat or GMAP for some reasons (could it be the big genome size?) but it seems that minimap2 can…
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From Beth:
I have been thinking about how to cater the current GWAS for Anvil. Here are my thoughts:
Currently, biggest difference between these GWAS tutorials we are creating is how to navigate the…
kozbo updated
4 years ago
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When running:
` sh ./run_coverage_analysis.sh /genomes/analysis/by_date/2015-10-23/0000074602/LP2000860-DNA_B04/coverage/LP2000860-DNA_B04.bw /genomes/analysis/by_date/2015-10-23/0000074602/LP200…
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Hi,
When I did run my analysis with 4C-ker and tryed to upload my data to the UCSC genome browser the genome browser claimed that my bed file end position to some chromosomes were bigger than the en…