rr1859 R.4Cker issues - Githubissues

rr1859 / R.4Cker

MIT License

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How does nearBait and cis compare near the bait?

#63 jonasungerback opened 2 years ago
0
issue with step 3: removing self ligated and undigested fragments

#62 rrueda89 opened 3 years ago
0
Error in DESeqDataSet(se, design = design, ignoreRank)

#61 eandresleon closed 3 years ago
1
Comprehension issues in output files

#60 R-PatricioMonteiro opened 4 years ago
0
Create LICENSE

#59 rr1859 closed 4 years ago
0
reduced genome script: sed extra character

#58 fiwong opened 4 years ago
12
Release info

#57 matthdsm opened 5 years ago
2
reduced_genome.sh weird extension addition

#56 jvandinter closed 5 years ago
4
non-numeric argument

#55 Inswasti closed 5 years ago
2
bypassing QC and asymmetrical replicates

#54 Inswasti closed 5 years ago
0
nbanalysis error, seq.default

#53 Inswasti closed 5 years ago
1
error in nb_results and trans analysis

#52 DimitrisZisis opened 5 years ago
0
reduce_genome fasta file.

#51 DimitrisZisis closed 5 years ago
0
Error in nearBaitAnalysis

#50 autobot101 closed 5 years ago
2
nearbait error

#49 DimitrisZisis opened 6 years ago
3
TRANS analysis

#48 AvitalPo opened 6 years ago
1
Issue with near bait analysis

#47 openpaul opened 6 years ago
1
Trying to do differential analysis with no replicates

#46 dotaa opened 6 years ago
0
Currently a NULL object is being returned.

#45 sameet opened 6 years ago
0
unable to plot using ggplot2, object 'count' not found

#44 dotaa opened 6 years ago
5
How to deal the paired-end data

#43 zhaocheng3326 opened 6 years ago
3
unable to map using bowtie and generate bedGraph

#42 dotaa closed 6 years ago
4
Something odd in differentialAnalysis

#41 Rseq closed 6 years ago
6
About step 3. Removing the self-ligated and undigested fragments and a suggestion to pipelines

#40 rvidal404 opened 6 years ago
5
About generated reduced genome.

#39 sameet opened 6 years ago
2
What if I have only one replicate per condition, and is there any way to ignore the QC?

#38 sameet closed 6 years ago
2
Error from 4Cker tranAnalysis

#37 amarsh33 opened 6 years ago
2
reduced genome and enz_file

#36 nagoue opened 6 years ago
4
reduced_genome.sh gives no output

#35 Lissy28 opened 6 years ago
9
How to use analyse using multiple baits?

#34 sameet opened 7 years ago
2
Bowtie 2 mapping w/ reduced genome

#33 aliu90 opened 7 years ago
2
Ignore QC filter

#32 rantingswede373 opened 7 years ago
2
reduced_genome.sh error on #get only sequences from FASTA file

#31 trotos opened 7 years ago
5
error

#30 trotos closed 7 years ago
0
parameter estimation issues

#29 daler opened 7 years ago
5
reduced genome, Bowtie command clarification.

#28 trotos opened 7 years ago
3
cisAnalysis error

#27 geneticoman opened 7 years ago
0
reduced_genome.sh error - grep: memory exhausted

#26 ml31k opened 7 years ago
6
cis analysis does not agree with the bedGraph

#25 iprada opened 7 years ago
4
4Cker identifes regions that are outside the chromosome

#24 iprada opened 7 years ago
2
Error in nearBaitAnalysis

#23 geneticoman opened 7 years ago
1
bed files are not sorted

#22 geneticoman opened 7 years ago
2
Inconsistencies with Interaction Counts

#21 aliu90 opened 7 years ago
2
reduced_genome.sh output has restriction enzyme sites

#20 iprada closed 7 years ago
2
reduced_genome.sh takes a lot

#19 iprada closed 7 years ago
9
'nearbait_size' for Different Model Organisms

#18 MediciPrime closed 7 years ago
2
error messages in reduced_genome.sh

#17 lwtan90 opened 7 years ago
2
Secondary Enzyme??

#16 lwtan90 opened 7 years ago
2
Unable to reproduce results.

#15 MediciPrime closed 7 years ago
2
warning messages in nearBaitAnalysis and cisAnalysis

#14 nagoue closed 7 years ago
4