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Hi,
I previously used pepper v0.1 to polish trio-binned ONT assemblies, where each haplotype is assembled and polished effectively as haploid from binned reads. Is there any possible approach to poli…
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Hi Arang,
I evaluated two NA12878 haplotype-aware assemblies by pre-built meryl dbs(from [here](https://obj.umiacs.umd.edu/marbl_publications/merqury/index.html)) and all metrics are fine except…
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Dear Canu developer,
I just finished my first genome draft of the canu assembly but the genome assembled is the almost double size (1.7 Gb) (evaluated by quast) than that expected/calculated using …
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Hi,
Recently, I have used Hifiasm to generate haplotype-resolved assemblies with trio binning. But I want to know which the reads name which used for assembly two haplotype-resolved genome separately…
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Dear HICANU developer,
I am learning to use HiCANU for later genomic assembly. I started with D. melanogaster HiFi data [available from NCBI at PRJNA573706 (SRR10238607,median: 24.4 kbp mean: …
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Hi,
I have been using Merqury to assess a trio-binning assembly. The first three steps successfully completed. However, two phaseblock steps generate files with no data.
I checked result.phase-bloc…
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I'm really excited merqury! Will you be supporting a conda install of the program any time soon?
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Hi, I'm having trouble setting up my meryl dbs for a set of 10x data. I ran _submit_build_10x.sh from merqury and am getting a segmentation fault in the union-sum step. I am only using k=5, but am get…
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Hi,
On the LSF cluster I am using, I've noticed that the Meryl "count" operation behaves as described with respect to the parallelisation section in the README, i.e. using all available cores.
```…
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Hi ,
I am downloading data of HG002 and NA12878 from [here](https://obj.umiacs.umd.edu/marbl_publications/merqury/index.html) but the HG002.k21.meryl.tar and NA12878.k21.meryl.tar links failed befo…