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Hi,
I'm new to HyPhy. I have a MAC pro tower 12 core with OS X Yosemite 10.10 instal. I downloaded the GUI version of HyPhy for MacOS and runs fine except the programs requiring a MPI environment. In…
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Several small proteins such as UB, SUMO, and Rub/NEDD need to proteolytically processed before they can be attached to a target.
This requires the cleavage of a peptide bond within UB, SUMO, etc. (p…
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It would be nice to extend our rate matrices to irreversible ones. We actually do have some examples, FreeBinary and FreeK but those seem to have problems. FreeK isn't supported much and FreeBinary se…
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Hi I keep getting stuck during the installation. After you fixed it by removing a bunch of unsupported packages the other day I tried it again. It got stuck but I managed to get it further along by…
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Using classification(), we could make up a function to contruct species trees from taxonomy.
Sure they may not reflect phylogeny and user should be cautious, but when there is no molecular information…
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@hdliv, we can add TNRS contexts for microbial groups if you want to define some for me. Note, they _must_ be monophyletic groups in the taxonomy in order for the contexts to make sense. I just need t…
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> I found the section fitting diffusion coefficients (in different branches) to the antigenic maps confusing -- if only because strict diffusion (in one or two dimensions) has no advection term and th…
trvrb updated
10 years ago