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OpenTreeOfLife
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taxomachine
taxonomy graphdb
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Taxomachine- problems with neo4j instance
#160
anatshafir1
opened
2 years ago
5
Bump httpclient from 4.2.1 to 4.5.13
#159
dependabot[bot]
opened
3 years ago
0
Bump junit from 4.8.1 to 4.13.1
#158
dependabot[bot]
opened
3 years ago
0
OTL for qiime2
#157
MonicaSteffi
opened
4 years ago
0
Bump httpclient from 4.2.1 to 4.3.6
#156
dependabot[bot]
closed
3 years ago
1
do not query-escape names when storing them; doing so breaks matches …
#155
mtholder
closed
6 years ago
1
v2/taxonomy/deprecated_taxa (non-public API call) appears to be broken
#154
mtholder
opened
6 years ago
0
bug fix when adding children to a genus hit, but the names are <= genus name length
#153
mtholder
closed
6 years ago
0
increase SUBTREE_LIMIT to match treemachine?
#152
jar398
opened
7 years ago
0
incorrect reporting of tree size limit
#151
josephwb
closed
7 years ago
1
Command line taxonomy browser
#150
jar398
opened
7 years ago
0
When building a new graphdb, read in additions
#149
jar398
opened
7 years ago
0
Implement id aliases
#148
jar398
closed
7 years ago
2
New taxa additions are not added to correct context
#147
kcranston
opened
7 years ago
0
Taxonomy files are UTF-8
#146
jar398
opened
7 years ago
1
add the phyla Chlorophyta and Charophyta (or Streptophyta) as barrier nodes
#145
jar398
closed
7 years ago
1
TNRS should organize matches by taxa?
#144
jar398
opened
7 years ago
0
Taxomachine is unaware of forwards
#143
jar398
closed
7 years ago
1
Need some way to access synonym info
#142
jar398
opened
7 years ago
0
Fix parent relationships for added taxa
#141
jar398
closed
7 years ago
1
Additions (taxonomic amendments)
#140
jimallman
closed
8 years ago
0
Context correction: Amoebae
#139
jar398
opened
8 years ago
0
Context correction: Arachnides
#138
jar398
opened
8 years ago
0
Add source id lookup feature to taxon_info method
#137
jar398
closed
8 years ago
1
taxomachine should load forwards.tsv
#136
jar398
opened
8 years ago
0
V3 API
#135
jar398
closed
8 years ago
0
improvements to contexts
#134
chinchliff
opened
8 years ago
7
unique_name
#133
kcranston
closed
8 years ago
1
is_dubious vs. is_suppressed vs. is_not_otu vs. ... ?
#132
jar398
closed
8 years ago
4
v3 API
#131
jar398
closed
8 years ago
1
reweight fuzzy matches scores to account for the fact that the suffix of epithets is often wrong.
#130
mtholder
opened
8 years ago
1
Fuzzy matching seems surprisingly sensitive to punctuation
#129
mtholder
opened
8 years ago
1
API methods should respond with 4xx or 5xx instead of "error": "..."
#128
jar398
closed
8 years ago
2
V3 API
#127
jar398
closed
8 years ago
0
Tests for v3 API
#126
jar398
closed
8 years ago
3
Make web services testing library compatible with phylesystem-api's
#125
jar398
closed
8 years ago
0
Style-ready taxo browser
#124
jimallman
closed
8 years ago
0
Primitive browser
#123
jar398
closed
8 years ago
0
Initial checkin of primitive taxonomy browser
#122
jar398
closed
8 years ago
0
Taxomachine needs to provide a MRCA method
#121
jar398
closed
8 years ago
2
Non-bird offered as homonym even when context set to birds
#120
jar398
closed
8 years ago
3
Lucene search should use unescaped name, then escaped if that gets a ParseError
#119
jar398
closed
8 years ago
1
get ottID from ncbi ID (or whatever)
#118
josephwb
closed
8 years ago
2
Add 'include_children' feature to 'taxon' method
#117
jar398
closed
8 years ago
0
Build taxonomy DB directly from ott distribution
#116
josephwb
closed
8 years ago
2
Taxonomy indexing is failing on devtree
#115
jar398
closed
8 years ago
2
Some suggestion for other taxa to constrain search for OTU mapping (feedback issue 36 from May 2014)
#114
jar398
opened
8 years ago
0
Scripts to apply monophyly and inclusion checks to taxomachine services
#113
jar398
opened
8 years ago
0
Fix test returns
#112
pmidford
closed
8 years ago
0
Add one or more context tests
#111
jar398
closed
8 years ago
8
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