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OpenTreeOfLife
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taxomachine
taxonomy graphdb
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treat UNCLASSIFIED same as INCERTAE_SEDIS #108
#110
jar398
closed
8 years ago
1
Update testing
#109
pmidford
closed
8 years ago
0
'unclassified' should be treated same as incertae sedis
#108
jar398
closed
8 years ago
7
limit mentioned
#107
mtholder
closed
9 years ago
0
Move ServiceTests.py to new test framework
#106
jar398
closed
8 years ago
2
Create ws-tests for #103 and other services/features
#105
jar398
closed
8 years ago
0
Services fail with OTT2.9draft12 but not with OTT2.8
#104
jar398
closed
8 years ago
3
add tax_sources field to lica and taxon services
#103
pmidford
closed
9 years ago
5
added more details on how to make a db from an OTT
#102
jar398
closed
9 years ago
0
Faulty escaping of taxon-name strings into TNRS (eg, "Escherichia-Shigella")
#101
jimallman
opened
9 years ago
1
updated OTT flags based on ott2.9draft9
#100
kcranston
closed
9 years ago
0
Update documentation and install scripts
#99
pmidford
opened
9 years ago
0
Don't return nodes flagged was_container, merged, etc. in TNRS results
#98
jar398
closed
8 years ago
0
API call to map source taxonomy ids to OTT ids
#97
f-heeger
closed
8 years ago
8
Modernize flags list
#96
jar398
closed
8 years ago
0
Archaea names are also governed by ICNP
#95
jar398
closed
9 years ago
2
Never expose node ids in the API
#94
jar398
closed
8 years ago
1
request to add Chlorophyta and Charophyta (or Streptophyta) as a taxonomic scope for name matching
#93
mtholder
opened
9 years ago
0
OTT ID returned more than once in a TNRS call
#92
mtholder
closed
9 years ago
2
Internal server error in taxonomy/subtree webservice if OTT ID is invalid
#91
mtholder
closed
8 years ago
1
Taxomachine should have a LICA calculation method
#90
jar398
closed
8 years ago
1
list_terminal_descendants not working
#89
mtholder
closed
8 years ago
5
report taxonomic sources in taxonomy/taxon and perhaps tnrs/match_names
#88
mtholder
closed
8 years ago
2
need to document unique_name in taxonomy response
#87
mtholder
closed
8 years ago
3
might want to rename `matched_node_id` in match_names response to `node_id`
#86
mtholder
closed
8 years ago
4
more properties in API/v2/taxonomy/taxon response
#85
mtholder
opened
9 years ago
2
we should probably have an induced_subtree method for the taxonomy
#84
mtholder
opened
9 years ago
0
rank field in matches does not appear to be filled in
#83
mtholder
closed
8 years ago
2
internal server error when name of length < 2 sent to match_names
#82
mtholder
closed
8 years ago
1
minor doc issue: order of responses in match_names
#81
mtholder
opened
9 years ago
2
Tests
#80
chinchliff
closed
10 years ago
7
nosetests: command not found
#79
jar398
closed
8 years ago
5
Better error for duplicate context root node
#78
chinchliff
closed
10 years ago
4
Add test for partially installed taxonomy
#77
chinchliff
opened
10 years ago
1
Confused about 'There was a problem getting the root node'
#76
jar398
closed
10 years ago
2
from run_tests.sh: return number of failed tests or return zero (success) if none
#75
chinchliff
closed
10 years ago
1
quoting problem in newick from v2/taxonomy/subtree
#74
mtholder
closed
10 years ago
2
TNRS result for 'Primates' has redundant match
#73
jar398
opened
10 years ago
5
Taxon labels
#72
chinchliff
closed
10 years ago
2
TNRS result for 'Primates' has redundant match
#71
jar398
closed
10 years ago
1
subtree should return newick with ott IDs
#70
mtholder
closed
8 years ago
5
match names context
#69
kayce
closed
10 years ago
1
Better error reporting for v2 plugins
#68
chinchliff
closed
10 years ago
0
Improvements to documentation annotations for API v2
#67
chinchliff
closed
10 years ago
1
Api v2 tnrs
#66
chinchliff
closed
10 years ago
0
API v2 taxonomy (merge me first)
#65
chinchliff
closed
10 years ago
9
Tnrs properties update
#64
chinchliff
closed
10 years ago
0
tnrs bug fixes, new features, and properties up
#63
chinchliff
closed
10 years ago
4
Duplicate(?) results when searching non-default context
#62
jimallman
closed
10 years ago
4
Show appropriate score when matching synonyms
#61
josephwb
closed
10 years ago
1
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