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## Is your feature request related to a problem? ##
modernize HBA (HydrogenBondAnalysis) to use AG (AtomGroups) as objects internally instead of selection strings to avoid the need for HBA analysis t…
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I am trying to run yank on a system where the ligand is a peptide, and it does not seem to recognize the peptide for alchemical modification, such that all of the "alchemical" states are exactly the s…
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what is your paper title
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https://fragalysis.diamond.ac.uk/viewer/react/projects/1263/923
Initially just diagnose, and work out how much work.
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Hello,
Do you have a paper or DOI that I can use to cite Feature Viewer?
Otherwise, would a link to this repo be sufficient?
Many thanks,
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If any process can regulate another, and this is very often context dependent, why can we not record this using regulates relations in annotation extensions?
As far as I can see, this would fit nicel…
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When you start with the game it's hard to find some stuff. Found a berry? where is it?
Bought an Egg but can't find it.
You get used to it but all the Items are all over the place. Start menu, under…
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# Description
eLife allows authors to include videos as primary assets in their articles.
## User Stories
### Author
- (1) As an author, I want to be able to edit the title and legend for a vi…
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Hello,
I needed help on how to go about generating embedding after ProtT5 has been finetuned. I have carried out finetuning of the model using the sample code 'PT5_LoRA_Finetuning_per_residue_class…
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In the CC form, it requires one to choose a relationship BEFORE choosing the GO CC term. However, if you don't select the correct relationship, the autocomplete does not provide the term you want to e…