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When doing indel realignment on multiple samples from the same patient (e.g. normal + tumors), we almost certainly to perform indel realignment jointly on the samples (rather than independently).
Th…
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After doing this, do another comparison run against GATK3 BQSR to see how much eliminating this code bought us in terms of performance.
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Job started running until spot instance closed.
restarting was manual
Resubmitting the job again is not an option through the UI
Clicking on Indel Realigner shows Internal server error intermittentl…
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Hi,
I get this error on some of our computation nodes but can't figure out what is going wrong/ is different.
``` bash
/share/java/jdk1.7.0/bin/java -Xmx4g -jar abra-0.92-SNAPSHOT-jar-with-dependenci…
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Hello,
I added the following tools to my Dockerfile:
```
RUN install-repository \
"--url https://toolshed.g2.bx.psu.edu -o pjbriggs --name macs21 --panel-section-name NGS:_Peak_Calling_Youtube" \
"--…
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Hi,
I have been running the process below for almost 3 days. It went without a problem until this step. I did not change anythin in the configuration related to mutation calling but I dont know why d…
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I originally received the ArrayIndexOutOfBoundsException error in all my samples, and then updated to the 0.94 version, which solved most of my problems. However, in one of my sample sets, I am still…
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I ran gk using tmux and detached the window during the process, it stopped the process in the middle.
Now that I want to restart the process, I get this error:
`genomekey -d germline -n 'Test_BRCA'…
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(alors que la mention est bien dans mistral)
exemple
![capture d ecran 2015-09-30 a 16 40 44](https://cloud.githubusercontent.com/assets/10072454/10196258/48d7c426-6792-11e5-8e6a-21348efde195.png)
…
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[Sujet du forum](http://zestedesavoir.com/forums/sujet/1376/les-pouces-vertrouge/)
Un nouveau membre signale que lorsqu'il vote, après rechargement de la page son vote est bien compté mais il n'a pas…