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Hi Theislab!
I am trying to merge h5ad file with a loom file generated by velocyto ran on the cell ranger output directory. The h5ad file I have generated by extracting information for a Seurat obj…
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# Goal Alignment
**H2 Goal 2: The quality of CZ Census metadata is improved.**
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# Technical Design
[Tech Spec: Increase the velocity of dataset schema evolution and dataset migration](https://d…
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Hi,
I am demultiplexing one 10X library and everything runs smoothly until I get to the SCTransform function for the singlets object. I keep getting this error:
`Error in make_cell_attr(umi, c…
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Hey guys!
I'm interested in saving my GPCCA kernel to a file with the code below:
```
from cellrank.tl.estimators import GPCCA
g = GPCCA(combined_kernel)
g.compute_schur(n_components=20)
g.com…
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Is it possible to rename genes (features) in the seurat v3?
When I'm trying to run:
rownames(object) = new_names
Error in dimnames(x)
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## Description
Just installed reanimated v2.4.1 and tried to use it with react-navigation/drawer (latest) and all I get is this error on both android and ios. Babel plugin is listed last. No idea…
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https://mp.weixin.qq.com/s/XVG7rXMtq37EW8CsTmwgag
ixxmu updated
7 months ago
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Hello,
I am confused about how to best prepare a Seurat object for Velocyto after integration. I have been able to run both velocyto and scvelo by taking the loom file created via standard velocyto…
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Hi there,
Thanks for the nice library and the way its organised.
I am trying to run PlotModuleTrajectory on a subset of cells where pseudotime has been run already..
p
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Hi,
I'm sorry to interupt you here. This is a fantasic work about cell differentiation. And we want to use your data for further study.
We download the raw fastq data of GSM4185642 from GEO da…