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## New feature
This idea was inspired in part by [this blog post](https://read-lab-confederation.github.io/blog/posts/bactopia-aws-and-67000-genomes/) as well as my own work with the [GEMmaker work…
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### Description of the bug
Hello,
I am having trouble with the sample input file. I have .csv file with correct file names and format as described in the pipeline page (also attached here). I get …
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Hi,
I was trying to run this tool on bam files generated from both SE and PE reads.
PE reads seem to work fine, but I am having troubles with SE reads:
```
2016-03-14 18:24:08 START test
201…
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failed to execute: para_RepeatMasker --out_prefix RepeatModeler_out --lib RM_*/*.classified --cpu 4 --tmp_dir para_RepeatMasker.tmp /home/changchuanjun/gene_structure_annotation_20240224/Fuji_Ral-Fuji…
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Dear author:
I'm a PhD student and I enjoyed reading your paper in Nature Communications [Mapping the perturbome network of cellular
perturbations]! I'm starting up my project that will also …
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# Bug Report
### Affected tool(s) or class(es)
PathSeq
### Affected version(s)
- 4.1.6.0
### Description
I wanted to better understand the PathSeq pipeline (and in particular, the Host…
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Hi everyone,
Maybe a big naive question, but do you think that it is possible to generate the vcf file necessary for demultiplexing based on RNAseq bulk for each patient?
Thanks a lot,
nicola…
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### Expected behavior and actual behavior
I am running the `fetchngs` [pipeline](https://nf-co.re/fetchngs/1.11.0) using sequera platform - AWS batch - to retrieve a public datasest of about 1000 …
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It would be good if the RData file saved has the sampleIDs as colnames instead of the file path.
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GENCODE v27 is still noted here... should be updated to v39