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Hello dear author,
I used this package for my scRNA-seq data analysis, now I wonder if I can use the function "BuildSNNGraph" on my DNA methylome data (data frame: genome_bin * cell_ID)? My purpose…
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Hi, zqyhyunbin :+1:
It's a really good job,
I learn the code you supply and you may only give the QC code
How you combine the Bulk-seq with scRNA-seq is not clear
could you please tell me how yo…
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- [ ] loading speed
- [x] expose the whole `outs` folder ~~https://stackoverflow.com/questions/1156246/having-django-serve-downloadable-files~~
check every buttons.
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- [x] run10x for 10xAT…
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Two Pulsar bugs:
1) In the scRNA menu, search for tissue (for instance lung) —> Search results are all bulk ATAC
2) Example: https://pulsar-encode.herokuapp.com/libraries/11405 this is a RNA …
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Dear developers,
I have a question regarding computing niche cell type composition from following tutorial.
[https://scenvi.readthedocs.io/en/latest/tutorial/MOp_MERFISH_tutorial.html](tut)
I…
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Status: Draft
Note: Putting this here as a place to park a potentially promising idea
Background - we have no objective measures of granularity in the Cell Ontology, although we are sometimes aske…
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### Description of feature
@mribeirodantas. Do you know if the scrna-seq pipeline on nf-core has testing data? I am thinking of creating a toy dataset to test over GitAction.
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**Version info**
- bcbio version (`bcbio_nextgen.py --version`): 1.2.9
- OS name and version (`lsb_release -ds`):
**To Reproduce**
Exact bcbio command you have used:
```
bcbio_nextgen.py /user…
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Thanks for your amazing tool for deconvolution of bulk seq data.
I now just want to deconvolute the TCGA bulk data based on a scRNA-seq reference data, and I have only the normalized expression data …
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Hi,
It's my first time I'm going to use bayesprism and I have an issue to create my input file. I'm wondering if I need to merge my query file and my reference file and read them in R all together…