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The output is described here: https://github.com/COMBINE-lab/cuttlefish#cuttlefish-1-output.
We want to parse the `.cf_seg` files output by Cuttlefish1 to build the unitigs from a reference dBG.
jermp updated
2 months ago
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Hello,
Assembling a diploid algae, 200-210 Mbp (uncollapsed diploid size.) Relatively high heterozygosity estimated between 1.5%-2%. Quite complex with lots of large tandem repeats. We have approxi…
tcb72 updated
3 years ago
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Hi Liheng,
When I use miniasm to assembly an 100x Pacbio genome, there was an error as follow:
Segmentation fault
What is the matter? I followed the mannual, and the logs were:
```
…
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Hello MaSuRCA team,
I used MaSuRCA (3.2.7) to hybrid assemble Brassica genome, and i meet the following two errors:
**./assemble.sh: line 158: work2.1/readPlacementsInSuperReads.final.read.super…
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Hi, there is this code in the Snakemake file:
```
rule all:
input:
"data/CLX/unitig_significance_annotated.txt",
"data/CLX/unitigs_TCH1516_chromosome_position.txt",
…
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Hello team Fulgor!
I'm trying to dump the color sets out of a Fulgor index. The dump looks like this:
```
num_references 4896
num_lists_in_color_set 3607699
color_list_0 7 24 405 1442 1561 22…
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Hi Sir, please I have done GWAS using the three genetic variants (SNPs, unitigs and gene presence or absence) and want to locate Intergenic regions, sRNAs and ORF from my GWas. Is there a way to do t…
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I get the following error while running Masurca on the HPC of my University with my Illumina and ONT libraries:
```
[Mon Mar 14 13:49:13 CET 2022] Processing pe library reads
[Mon Mar 14 13:49:13…
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Hi:
I ran MaSuRCA-3.3.4 with 3 Illumina paired-end samples successfully but fail with 4 samples. I used PSB to submit my task and failed at the first time. I thought it might be a coincidence, so I d…
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Hello!
I got to analysing after clearing the startup hiccups of #252.
A succinct summary of the original data set:
- About 380 _Listeria monocytogenes_ strains were sequenced
- The strains we…