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Hi,
really powerful package!
I am currently using data set single cell allelic analysis count files(alleleA and alleleB) wanted to try the package normalizing read counts, which is without spike ins…
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Hello,
I have spatial transcriptome data from mouse C57BL6 X CAST.
Can this pipeline also be used to generate allele specific gene expression matrix? So that there will be two matrices of the sa…
WT215 updated
4 years ago
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- [x] Overview widget: Change 'List of WormBase genes identified in the paper' with 'List of WormBase genes experimentally studied in the paper'
- [x] Change the text in the question mark 'Pleas…
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Transferred from #20 (which is a bit of a catchall as well as kind of old) ...
Val:
I think first we would like to be able to do "expression levels" in Canto as that is the one we use the most. …
mah11 updated
4 years ago
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Dear developers:
Thanks for the excellent tools.
After getting genotype from arcasHLA , I was wondering that is that possible to get allele specific expression using these genotypes ?
The actual qu…
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**Description**
There has been a change in the URL for allele fasta downloads at PubMLST. This causes `bactopia datasets` to fail
**Steps to Reproduce**
```
bactopia datasets datasets --ariba …
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As found out in #2478, the [`mutation_event`](https://github.com/cBioPortal/cbioportal/blob/v1.13.2/db-scripts/src/main/resources/cgds.sql#L395) table contains a unique key too large to be accepted by…
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# PhET Code-Review Checklist (a.k.a "CRC")
* Mark failed items with ❌
* Call attention to items with ⚠️
* Mark items that are not applicable with **N/A**
## GitHub Issues
The following stan…
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I was wondering how SNPsplit would handle phased human genomes. I didn't see anything in the documentation that seemed to take it into account but I could've missed it. Thanks!
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Hi：
I want to know if samtools can use RNA-Seq to calculate the SNP expression in VCF files.