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Hi!
I am a newbie and I am trying to include DADA2 in my pipeline.
The problem is that running fastqPairedFilter:
for(i in seq_along(fnFs)) {
fastqPairedFilter(c(fnFs[i], fnRs[i]), c(filtFs[i]…
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Hi,
just trying this, the test and install worked fine. thanks.
It seems my sample table isn't ok despite using the supplied script.
It looks like this, I've tried removing many samples, removi…
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**Snakemake version**
6.3.0
**Describe the bug**
A conda env which works locally does not work on google cloud life sciences
I have a conda env in my workflow (https://github.com/mw55309/dog_m…
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I'm currently prototyping a python-based microbiome analysis library—just something simple to automate the generation of custom taxa plots and perhaps some scikit-learn based PCA analysis. I wondered …
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Dear atlas developers/users,
I have generated a gene catalog using atlas. Do you have any guidline how to map back and quantify the proportion of genes (I guess noramlizing by gene length) in the d…
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Hi,
I am submitting 16S amplicon sequencing data to the EBI ENA. I have 3 types of samples, cow milk, cheese rind and cheese core. I have found the two first terms in the ontology, but i miss the "ch…
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Can we add a function for quick visualization of adundance profiles as a density plot?
The [microbiome pkg equivalent](https://github.com/microbiome/microbiome/blob/master/R/plot_density.R).
`…
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Dear Francisco,
Recently, I have tried to use your pipeline to analyse some metagenome data. For the bin, i found I can only get about 30 MAGs of high quality (completeness > 90% by checkM). So I am …
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**New term details**
```
Term name - host location
Structured comment name -host_location
Definition - Location of the symbiotic organism within its host: e.g. intracellular if present within host…
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Hello,
I run your workflow on 60cpu -- 500go RAM machine using slurm manager and a singularity install but my job crash at 50% of compleness.
The slurm.err file display the following error mess…